3KEE

HCV NS3/NS4A complexed with Non-covalent macrocyclic compound TMC435


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.196 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Induced-Fit Binding of the Macrocyclic Noncovalent Inhibitor TMC435 to its HCV NS3/NS4A Protease Target

Cummings, M.D.Lindberg, J.D.Lin, T.-I.de Kock, H.Lenz, O.Lilja, E.Fellander, S.Baraznenok, V.Nystrom, S.Nilsson, M.Vrang, L.Edlund, M.Rosenquist, A.Samuelsson, B.Raboisson, P.Simmen, K.

(2010) Angew.Chem.Int.Ed.Engl. 49: 1652-1655


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Genome polyprotein
A, B, C, D
190Hepatitis C virusN/A
Find proteins for P90191 (Hepatitis C virus)
Go to UniProtKB:  P90191
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
19-mer peptide from Genome polyprotein
E, F, G, H
23Hepatitis C virusN/A
Find proteins for Q6GYR8 (Hepatitis C virus)
Go to UniProtKB:  Q6GYR8
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B, C, D
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
GOL
Query on GOL

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Download CCD File 
C, D
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
30B
Query on 30B

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Download CCD File 
A, B, C, D
(2R,3aR,10Z,11aS,12aR,14aR)-N-(cyclopropylsulfonyl)-2-({7-methoxy-8-methyl-2-[4-(1-methylethyl)-1,3-thiazol-2-yl]quinolin-4-yl}oxy)-5-methyl-4,14-dioxo-2,3,3a,4,5,6,7,8,9,11a,12,13,14,14a-tetradecahydrocyclopenta[c]cyclopropa[g][1,6]diazacyclotetradecine-12a(1H)-carboxamide
C38 H47 N5 O7 S2
JTZZSQYMACOLNN-VDWJNHBNSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
30BKi: 0.4 - 0.5 nM (96) BINDINGDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.196 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 48.034α = 92.44
b = 54.454β = 93.16
c = 85.495γ = 116.04
Software Package:
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing
DNAdata collection
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-03-09
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance