3I3S | pdb_00003i3s

Crystal Structure of H-Ras with Thr50 replaced by Isoleucine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.36 Å
  • R-Value Free: 
    0.178 (Depositor), 0.200 (DCC) 
  • R-Value Work: 
    0.159 (Depositor), 0.180 (DCC) 
  • R-Value Observed: 
    0.160 (Depositor) 

Starting Model: experimental
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Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted GNPClick on this verticalbar to view details

This is version 1.3 of the entry. See complete history


Literature

A restricted spectrum of NRAS mutations causes Noonan syndrome.

Cirstea, I.C.Kutsche, K.Dvorsky, R.Gremer, L.Carta, C.Horn, D.Roberts, A.E.Lepri, F.Merbitz-Zahradnik, T.Konig, R.Kratz, C.P.Pantaleoni, F.Dentici, M.L.Joshi, V.A.Kucherlapati, R.S.Mazzanti, L.Mundlos, S.Patton, M.A.Silengo, M.C.Rossi, C.Zampino, G.Digilio, C.Stuppia, L.Seemanova, E.Pennacchio, L.A.Gelb, B.D.Dallapiccola, B.Wittinghofer, A.Ahmadian, M.R.Tartaglia, M.Zenker, M.

(2010) Nat Genet 42: 27-29

  • DOI: https://doi.org/10.1038/ng.497
  • Primary Citation of Related Structures:  
    3I3S

  • PubMed Abstract: 

    Noonan syndrome, a developmental disorder characterized by congenital heart defects, reduced growth, facial dysmorphism and variable cognitive deficits, is caused by constitutional dysregulation of the RAS-MAPK signaling pathway. Here we report that germline NRAS mutations conferring enhanced stimulus-dependent MAPK activation account for some cases of this disorder. These findings provide evidence for an obligate dependency on proper NRAS function in human development and growth.


  • Organizational Affiliation

    Institute of Biochemistry and Molecular Biology II, Heinrich-Heine University Medical Center, Düsseldorf, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
GTPase HRasA [auth R]166Homo sapiensMutation(s): 1 
Gene Names: HRASHRAS1
EC: 3.6.5.2
UniProt & NIH Common Fund Data Resources
Find proteins for P01112 (Homo sapiens)
Explore P01112 
Go to UniProtKB:  P01112
PHAROS:  P01112
GTEx:  ENSG00000174775 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01112
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.36 Å
  • R-Value Free:  0.178 (Depositor), 0.200 (DCC) 
  • R-Value Work:  0.159 (Depositor), 0.180 (DCC) 
  • R-Value Observed: 0.160 (Depositor) 
Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 89.21α = 90
b = 89.21β = 90
c = 134.64γ = 120
Software Package:
Software NamePurpose
XSCALEdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
MAR345dtbdata collection
XDSdata reduction
MOLREPphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted GNPClick on this verticalbar to view details

Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-12-22
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2021-10-13
    Changes: Database references, Derived calculations
  • Version 1.3: 2023-09-06
    Changes: Data collection, Refinement description