3HZN

Structure of the Salmonella typhimurium nfnB dihydropteridine reductase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.177 
  • R-Value Observed: 0.179 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structure of the Salmonella typhimurium nfnB dihydropteridine reductase

Anderson, S.M.Wawrzak, Z.Onopriyenko, O.Skarina, T.Anderson, W.F.Savchenko, A.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Oxygen-insensitive NAD(P)H nitroreductaseA, B, C, D, E, F, G, H220Salmonella enterica subsp. enterica serovar Typhimurium str. LT2Mutation(s): 0 
Gene Names: nfnBnfsISTM0578nfsB
EC: 1
UniProt
Find proteins for P15888 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
Explore P15888 
Go to UniProtKB:  P15888
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 7 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FLC
Query on FLC

Download Ideal Coordinates CCD File 
U [auth B], WB [auth F]CITRATE ANION
C6 H5 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-K
 Ligand Interaction
TLA
Query on TLA

Download Ideal Coordinates CCD File 
EA [auth C], FA [auth C], I [auth A], NC [auth H], V [auth B], XB [auth F], ZA [auth D]L(+)-TARTARIC ACID
C4 H6 O6
FEWJPZIEWOKRBE-JCYAYHJZSA-N
 Ligand Interaction
SIN
Query on SIN

Download Ideal Coordinates CCD File 
AB [auth D] , AC [auth F] , BB [auth D] , BC [auth F] , CB [auth D] , DB [auth D] , EB [auth D] , EC [auth G] , 
AB [auth D], AC [auth F], BB [auth D], BC [auth F], CB [auth D], DB [auth D], EB [auth D], EC [auth G], FB [auth D], FC [auth G], GA [auth C], GB [auth D], GC [auth G], HA [auth C], HC [auth G], IA [auth C], IC [auth G], J [auth A], JA [auth C], K [auth A], KA [auth C], L [auth A], LA [auth C], M [auth A], MA [auth C], N [auth A], NA [auth C], NB [auth E], O [auth A], OA [auth C], OB [auth E], OC [auth H], PB [auth E], PC [auth H], QB [auth E], QC [auth H], RB [auth E], RC [auth H], SC [auth H], W [auth B], X [auth B], Y [auth B], YB [auth F], ZB [auth F]
SUCCINIC ACID
C4 H6 O4
KDYFGRWQOYBRFD-UHFFFAOYSA-N
 Ligand Interaction
MLI
Query on MLI

Download Ideal Coordinates CCD File 
AA [auth B] , BA [auth B] , CC [auth F] , HB [auth D] , IB [auth D] , JB [auth D] , JC [auth G] , KC [auth G] , 
AA [auth B], BA [auth B], CC [auth F], HB [auth D], IB [auth D], JB [auth D], JC [auth G], KC [auth G], P [auth A], PA [auth C], Q [auth A], QA [auth C], R [auth A], RA [auth C], S [auth A], SA [auth C], SB [auth E], TC [auth H], Z [auth B]
MALONATE ION
C3 H2 O4
OFOBLEOULBTSOW-UHFFFAOYSA-L
 Ligand Interaction
ACT
Query on ACT

Download Ideal Coordinates CCD File 
KB [auth D], LC [auth G], TA [auth C]ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
CL
Query on CL

Download Ideal Coordinates CCD File 
CA [auth B] , DC [auth F] , LB [auth D] , MB [auth D] , MC [auth G] , T [auth A] , TB [auth E] , UA [auth C] , 
CA [auth B], DC [auth F], LB [auth D], MB [auth D], MC [auth G], T [auth A], TB [auth E], UA [auth C], UB [auth E], VA [auth C], WA [auth C], XA [auth C]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
NA
Query on NA

Download Ideal Coordinates CCD File 
DA [auth B], UC [auth H], VB [auth E], YA [auth C]SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D, E, F, G, HL-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 280.34α = 90
b = 96.76β = 90.36
c = 131.84γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
BLU-MAXdata collection
HKL-2000data reduction
SHARPphasing

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-07-07
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Source and taxonomy, Version format compliance
  • Version 1.2: 2017-11-01
    Changes: Refinement description