Download MendeleyStructure of the Salmonella typhimurium nfnB dihydropteridine reductase
Anderson, S.M., Wawrzak, Z., Onopriyenko, O., Skarina, T., Anderson, W.F., Savchenko, A., Center for Structural Genomics of Infectious Diseases (CSGID)To be published.
3HZN
Structure of the Salmonella typhimurium nfnB dihydropteridine reductase
- PDB DOI: https://doi.org/10.2210/pdb3HZN/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-06-23 Released: 2009-07-07
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.222
- R-Value Work: 0.177
- R-Value Observed: 0.179
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Oxygen-insensitive NAD(P)H nitroreductase | 220 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Mutation(s): 0 Gene Names: nfnB, nfsI, STM0578, nfsB EC: 1 |  | |
UniProt | |||||
Find proteins for P15888 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)) Explore P15888 Go to UniProtKB: P15888 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P15888 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 7 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FLC Query on FLC | U [auth B], WB [auth F] | CITRATE ANION C6 H5 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-K |  | Ligand Interaction | |
| TLA Query on TLA | EA [auth C] FA [auth C] I [auth A] NC [auth H] V [auth B] | L(+)-TARTARIC ACID C4 H6 O6 FEWJPZIEWOKRBE-JCYAYHJZSA-N |  | Ligand Interaction | |
| SIN Query on SIN | AB [auth D] AC [auth F] BB [auth D] BC [auth F] CB [auth D] | SUCCINIC ACID C4 H6 O4 KDYFGRWQOYBRFD-UHFFFAOYSA-N |  | Ligand Interaction | |
| MLI Query on MLI | AA [auth B] BA [auth B] CC [auth F] HB [auth D] IB [auth D] | MALONATE ION C3 H2 O4 OFOBLEOULBTSOW-UHFFFAOYSA-L |  | Ligand Interaction | |
| ACT Query on ACT | KB [auth D], LC [auth G], TA [auth C] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | Ligand Interaction | |
| CL Query on CL | CA [auth B] DC [auth F] LB [auth D] MB [auth D] MC [auth G] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
| NA Query on NA | DA [auth B], UC [auth H], VB [auth E], YA [auth C] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D, E A, B, C, D, E, F, G, H | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.222
- R-Value Work: 0.177
- R-Value Observed: 0.179
- Space Group: C 1 2 1
- Diffraction Data: https://doi.org/10.18430/M33HZN
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 280.34 | α = 90 |
| b = 96.76 | β = 90.36 |
| c = 131.84 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| BLU-MAX | data collection |
| HKL-2000 | data reduction |
| SHARP | phasing |
Entry History
Deposition Data
- Released Date: 2009-07-07 Deposition Author(s): Anderson, S.M., Wawrzak, Z., Onopriyenko, O., Skarina, T., Anderson, W.F., Savchenko, A., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2009-07-07
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description
