Predicting ligand binding affinity with alchemical free energy methods in a polar model binding site.
Boyce, S.E., Mobley, D.L., Rocklin, G.J., Graves, A.P., Dill, K.A., Shoichet, B.K.(2009) J.Mol.Biol. 394: 747-763
- PubMed: 19782087 
- DOI: 10.1016/j.jmb.2009.09.049
- Primary Citation of Related Structures:  
- PubMed Abstract: 
We present a combined experimental and modeling study of organic ligand molecules binding to a slightly polar engineered cavity site in T4 lysozyme (L99A/M102Q). For modeling, we computed alchemical absolute binding free energies. These were blind te ...