3HH1

The Structure of a Tetrapyrrole methylase family protein domain from Chlorobium tepidum TLS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.227 
  • R-Value Work: 0.181 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The Structure of a Tetrapyrrole methylase family protein domain from Chlorobium tepidum TLS.

Cuff, M.E.Sather, A.Clancy, S.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Tetrapyrrole methylase family protein
A, B, C, D
117Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)Mutation(s): 0 
Gene Names: rsmI
EC: 2.1.1.198
Find proteins for Q8KBY6 (Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS))
Go to UniProtKB:  Q8KBY6
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B, C, D
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
B
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.227 
  • R-Value Work: 0.181 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 62.986α = 90.00
b = 47.569β = 91.00
c = 64.497γ = 90.00
Software Package:
Software NamePurpose
Cootmodel building
SCALEPACKdata scaling
REFMACrefinement
HKL-3000data scaling
DENZOdata reduction
SBC-Collectdata collection
SHELXEmodel building
DMphasing
CCP4phasing
SOLVEphasing
Omodel building
HKL-3000data reduction
MLPHAREphasing
RESOLVEphasing
HKL-3000phasing
PDB_EXTRACTdata extraction
SHELXDphasing
ARP/wARPmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-07-07
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Refinement description, Version format compliance
  • Version 1.2: 2017-11-01
    Type: Refinement description