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The Structure of a Tetrapyrrole methylase family protein domain from Chlorobium tepidum TLS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 297 0.2M Ammonium Sulfate, 20% PEG 3350, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 1.95 36.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.986 α = 90 b = 47.569 β = 91 c = 64.497 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2009-02-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97945, 0.97931 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 99.9 0.09 20.761 7.6 35606 35606 -3 29.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 100 0.853 7.3 1796
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.85 37.96 32800 32800 1648 99.73 0.183 0.183 0.181 0.1958 0.227 0.2397 RANDOM 26.295
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2 0.1 0.5 1.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.387 r_dihedral_angle_4_deg 16.976 r_dihedral_angle_3_deg 14.995 r_dihedral_angle_1_deg 5.486 r_scangle_it 4.957 r_scbond_it 2.922 r_mcangle_it 1.883 r_angle_refined_deg 1.487 r_mcbond_it 1.018 r_angle_other_deg 0.915
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.387 r_dihedral_angle_4_deg 16.976 r_dihedral_angle_3_deg 14.995 r_dihedral_angle_1_deg 5.486 r_scangle_it 4.957 r_scbond_it 2.922 r_mcangle_it 1.883 r_angle_refined_deg 1.487 r_mcbond_it 1.018 r_angle_other_deg 0.915 r_mcbond_other 0.286 r_chiral_restr 0.088 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3249 Nucleic Acid Atoms Solvent Atoms 233 Heterogen Atoms 34
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MLPHARE phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building SOLVE phasing RESOLVE phasing ARP/wARP model building CCP4 phasing O model building Coot model building