3H2V

Human raver1 RRM1 domain in complex with human vinculin tail domain Vt

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.277 
  • R-Value Work: 0.210 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history. 

Literature

Raver1 interactions with vinculin and RNA suggest a feed-forward pathway in directing mRNA to focal adhesions

Lee, J.H., Rangarajan, E.S., Yogesha, S.D., Izard, T.

(2009) Structure 17: 833-842

  • DOI: 10.1016/j.str.2009.04.010
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 

    • The translational machinery of the cell relocalizes to focal adhesions following the activation of integrin receptors. This response allows for rapid, local production of components needed for adhesion complex assembly and signaling. Vinculin links f ...

    The translational machinery of the cell relocalizes to focal adhesions following the activation of integrin receptors. This response allows for rapid, local production of components needed for adhesion complex assembly and signaling. Vinculin links focal adhesions to the actin cytoskeleton following its activation by integrin signaling, which severs intramolecular interactions of vinculin's head and tail (Vt) domains. Our vinculin:raver1 crystal structures and binding studies show that activated Vt selectively interacts with one of the three RNA recognition motifs of raver1, that the vinculin:raver1 complex binds to F-actin, and that raver1 binds selectively to RNA, including a sequence found in vinculin mRNA. Further, mutation of residues that mediate interaction of raver1 with vinculin abolish their colocalization in cells. These findings suggest a feed-forward model where vinculin activation at focal adhesions provides a scaffold for recruitment of raver1 and its mRNA cargo to facilitate the production of components of adhesion complexes.

    Organizational Affiliation: 

    Cell Adhesion Laboratory, Department of Cancer Biology, The Scripps Research Institute, Jupiter, FL 33458, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Vinculin
A, B, C, D
188Homo sapiensMutation(s): 0 
Gene Names: VCL
Find proteins for P18206 (Homo sapiens)
Go to Gene View: VCL
Go to UniProtKB:  P18206
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Raver-1
E, F, G, H
74Homo sapiensMutation(s): 0 
Gene Names: RAVER1 (KIAA1978)
Find proteins for Q8IY67 (Homo sapiens)
Go to Gene View: RAVER1
Go to UniProtKB:  Q8IY67
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.277 
  • R-Value Work: 0.210 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 41.818α = 89.77
b = 70.921β = 90.04
c = 99.342γ = 104.04
Software Package:
Software NamePurpose
BUSTER-TNTrefinement

Structure Validation

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View more in-depth experimental data

Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-07-28
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance