3H2V
Human raver1 RRM1 domain in complex with human vinculin tail domain Vt
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E | SCOP2 Family | Canonical RBD | 8088419 | 4000236 | SCOP2 (2022-06-29) |
E | SCOP2 Superfamily | RNA-binding domain, RBD | 8088420 | 3000110 | SCOP2 (2022-06-29) |
F | SCOP2B Superfamily | RNA-binding domain, RBD | 8088420 | 3000110 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | RNA-binding domain, RBD | 8088420 | 3000110 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | RNA-binding domain, RBD | 8088420 | 3000110 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Vinculin_2nd | e3h2vA1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: alpha-catenin-related | T: alpha-catenin/vinculin | F: Vinculin_2nd | ECOD (1.6) |
B | Vinculin_2nd | e3h2vB1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: alpha-catenin-related | T: alpha-catenin/vinculin | F: Vinculin_2nd | ECOD (1.6) |
C | Vinculin_2nd | e3h2vC1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: alpha-catenin-related | T: alpha-catenin/vinculin | F: Vinculin_2nd | ECOD (1.6) |
D | Vinculin_2nd | e3h2vD1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: alpha-catenin-related | T: alpha-catenin/vinculin | F: Vinculin_2nd | ECOD (1.6) |
E | RRM_1_3 | e3h2vE1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_3 | ECOD (1.6) |
F | RRM_1_3 | e3h2vF1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_3 | ECOD (1.6) |
G | RRM_1_3 | e3h2vG1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_3 | ECOD (1.6) |
H | RRM_1_3 | e3h2vH1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_3 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00076 | RNA recognition motif (RRM_1) | RNA recognition motif | The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR017997 | Vinculin | Family | |
IPR036723 | Alpha-catenin/vinculin-like superfamily | Homologous Superfamily | |
IPR006077 | Vinculin/alpha-catenin | Family | |
IPR000633 | Vinculin, conserved site | Conserved Site | |
IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily | Homologous Superfamily | |
IPR034633 | Ribonucleoprotein PTB-binding 1, RNA recognition motif 1 | Domain | |
IPR000504 | RNA recognition motif domain | Domain | |
IPR035979 | RNA-binding domain superfamily | Homologous Superfamily | |
IPR034635 | Ribonucleoprotein PTB-binding 1, RNA recognition motif 3 | Domain |