3DME

Crystal structure of conserved exported protein from Bordetella pertussis. NorthEast Structural Genomics target BeR141

• PDB DOI: https://doi.org/10.2210/pdb3DME/pdb

• Classification: structural genomics, unknown function
• Organism(s): Bordetella pertussis
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2008-06-30 Released: 2008-08-26 
• Deposition Author(s): Seetharaman, J., Abashidze, M., Wang, D., Janjua, H., Foote, E.L., Xiao, R., Liu, J., Everett, J.K., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 0.217 
• R-Value Work: 0.189 
• R-Value Observed: 0.190 

Literature

Crystal structure of conserved exported protein from Bordetella pertussis. NorthEast Structural Genomics target BeR141

Seetharaman, J., Abashidze, M., Wang, D., Janjua, H., Foote, E.L., Xiao, R., Liu, J., Everett, J.K., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 78.94 kDa 
• Atom Count: 6,160 
• Modelled Residue Count: 732 
• Deposited Residue Count: 738 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
conserved exported protein	A, B	369	Bordetella pertussis	Mutation(s): 0  Gene Names: BP3253
UniProt
Find proteins for Q7VU70 (Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)) Explore Q7VU70  Go to UniProtKB:  Q7VU70

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
FAD	C [auth A], F [auth B]	FLAVIN-ADENINE DINUCLEOTIDE C27 H33 N9 O15 P2 VWWQXMAJTJZDQX-UYBVJOGSSA-N
TLA	D [auth A], E [auth A], G [auth B]	L(+)-TARTARIC ACID C4 H6 O6 FEWJPZIEWOKRBE-JCYAYHJZSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 0.217 
• R-Value Work: 0.189 
• R-Value Observed: 0.190 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 151.717	α = 90
b = 50.573	β = 115.45
c = 104.895	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
ADSC	data collection
HKL-2000	data reduction
HKL-2000	data scaling
SOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-08-26 
Deposition Author(s): Seetharaman, J., Abashidze, M., Wang, D., Janjua, H., Foote, E.L., Xiao, R., Liu, J., Everett, J.K., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

Revision History  

• Version 1.0: 2008-08-26
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2012-02-22
  Changes: Structure summary
• Version 1.3: 2024-02-21
  Changes: Data collection, Database references, Derived calculations