3DL3 | pdb_00003dl3

Crystal structure of the tellurite resistance protein TehB. Northeast Structural Genomics Consortium target VfR98 .

PDB DOI: https://doi.org/10.2210/pdb3DL3/pdb

Classification: structural genomics, unknown function
Organism(s): Aliivibrio fischeri ES114
Mutation(s): No

Deposited: 2008-06-26 Released: 2008-08-26
Deposition Author(s): Kuzin, A.P., Su, M., Seetharaman, J., Wang, D., Mao, L., Maglaqui, M., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.274 (Depositor), 0.285 (DCC)
R-Value Work:
0.232 (Depositor), 0.241 (DCC)
R-Value Observed:
0.232 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of the tellurite resistance protein TehB. Northeast Structural Genomics Consortium target VfR98.

Kuzin, A.P., Su, M., Seetharaman, J., Wang, D., Mao, L., Maglaqui, M., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Tong, L., Hunt, J.F.

To be published.

Macromolecule Content

Total Structure Weight: 111.6 kDa
Atom Count: 6,572
Modeled Residue Count: 802
Deposited Residue Count: 952
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tellurite resistance protein B	A B C [auth D] D [auth E] E [auth G] A, B, C [auth D], D [auth E], E [auth G], F [auth H], G [auth F], H [auth I]	119	Aliivibrio fischeri ES114	Mutation(s): 0 Gene Names: tehB, VF_1779
UniProt
Find proteins for Q5E3X2 (Aliivibrio fischeri (strain ATCC 700601 / ES114)) Explore Q5E3X2 Go to UniProtKB: Q5E3X2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5E3X2
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A B C [auth D] D [auth E] E [auth G] A, B, C [auth D], D [auth E], E [auth G], F [auth H], G [auth F], H [auth I]	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.274 (Depositor), 0.285 (DCC)
R-Value Work: 0.232 (Depositor), 0.241 (DCC)
R-Value Observed: 0.232 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 43.574	α = 90
b = 205.02	β = 110.21
c = 56.356	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
ADSC	data collection
HKL-2000	data reduction
SCALEPACK	data scaling
SnB	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2008-08-26

Deposition Author(s):

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2008-08-26
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2017-10-25
Changes: Refinement description
Version 1.3: 2024-10-30
Changes: Data collection, Database references, Derived calculations, Structure summary