3CWC

Crystal structure of putative glycerate kinase 2 from Salmonella typhimurium LT2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.23 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.188 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

X-ray crystal structure of putative glycerate kinase 2 from Salmonella typhimurium LT2.

Osipiuk, J.Zhou, M.Holzle, D.Anderson, W.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Putative glycerate kinase 2
A, B
383Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)N/A
Find proteins for Q8ZME0 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
Go to UniProtKB:  Q8ZME0
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A, B
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 63.733α = 90.00
b = 59.549β = 106.01
c = 103.605γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
DMphasing
SOLVEphasing
RESOLVEphasing
MLPHAREphasing
PDB_EXTRACTdata extraction
HKL-3000data reduction
SBC-Collectdata collection
HKL-3000phasing
HKL-3000data scaling
SHELXDphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-07-08
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Version format compliance
  • Version 1.2: 2014-04-02
    Type: Source and taxonomy