3CWC | pdb_00003cwc

Crystal structure of putative glycerate kinase 2 from Salmonella typhimurium LT2

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d3cwcb1	Alpha and beta proteins (a/b)	Glycerate kinase I	Glycerate kinase I	automated matches	automated matches	Salmonella typhimurium LT2 (Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ],	SCOPe (2.08)
B	d3cwcb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Salmonella typhimurium LT2 (Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ],	SCOPe (2.08)
A	d3cwca1	Alpha and beta proteins (a/b)	Glycerate kinase I	Glycerate kinase I	automated matches	automated matches	Salmonella typhimurium LT2 (Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ],	SCOPe (2.08)
A	d3cwca2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Salmonella typhimurium LT2 (Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	Glycerate kinase I	8082297	4002336	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Glycerate kinase I	8082298	3001118	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Glycerate kinase I	8082298	3001118	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e3cwcB1	A: HSP20-like	X: HSP20-like chaperones	H: HSP20-like chaperones	T: Dynamin_N	F:	ECOD (20:10:01)
A		e3cwcA1	A: HSP20-like	X: profilin-like	H: profilin-like	T: PRK	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.50.10350	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycerate kinase	CATH (4.3.0)
B	3.90.1510.10	Alpha Beta	Alpha-Beta Complex	Glycerate kinase, domain 2	Glycerate kinase, domain 2	CATH (4.3.0)
A	3.40.50.10350	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycerate kinase	CATH (4.3.0)
A	3.90.1510.10	Alpha Beta	Alpha-Beta Complex	Glycerate kinase, domain 2	Glycerate kinase, domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF02595	Glycerate kinase family (Gly_kinase)	Glycerate kinase family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Putative glycerate kinase 2	kinase activity transferase activity catalytic activity glycerate kinase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups glycerate 2-kinase activity	phosphorylation phosphate-containing compound metabolic process small molecule metabolic process metabolic process cellular process organic acid metabolic process organic acid phosphorylation phosphorus metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR004381	Glycerate kinase	Family
A, B	IPR018193	Glycerate kinase, flavodoxin-like fold	Homologous Superfamily
A, B	IPR018197	Glycerate kinase, restriction-enzyme-like fold	Homologous Superfamily
A, B	IPR036129	Glycerate kinase superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.