Glycine ethyl ester shielding on the aromatic surfaces of lysozyme: Implication for suppression of protein aggregation
Ito, L., Shiraki, K., Hasegawa, K., Kumasaka, T.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Lysozyme C | A | 129 | Gallus gallus | Mutation(s): 0  Gene Names: LYZ EC: 3.2.1.17 | ![]() |
UniProt | |||||
Find proteins for P00698 (Gallus gallus) Explore P00698  Go to UniProtKB:  P00698 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P00698 | ||||
Protein Feature ViewExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GEE Query on GEE | B [auth A], C [auth A], D [auth A] | ethyl glycinate C4 H9 N O2 NTNZTEQNFHNYBC-UHFFFAOYSA-N | Ligand Interaction | ||
CL Query on CL | E [auth A], F [auth A], G [auth A], H [auth A], I [auth A], | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | Ligand Interaction | ||
NA Query on NA | O [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N | Ligand Interaction |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 77.171 | α = 90 |
b = 77.171 | β = 90 |
c = 36.898 | γ = 90 |
Software Name | Purpose |
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HKL-2000 | data collection |
MOLREP | phasing |
PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
REFMAC | refinement |