3ASW | pdb_00003asw

Structural and biochemical characterization of ClfB:ligand interactions

PDB DOI: https://doi.org/10.2210/pdb3ASW/pdb

Classification: CELL ADHESION
Organism(s): Staphylococcus aureus subsp. aureus N315, Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2010-12-22 Released: 2011-05-04
Deposition Author(s): Ganesh, V.K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free:
0.219 (Depositor), 0.204 (DCC)
R-Value Work:
0.182 (Depositor)
R-Value Observed:
0.184 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3ASW

This is version 1.2 of the entry. See complete history.

Literature

Structural and biochemical characterization of ClfB:ligand interactions

Ganesh, V.K., Barbu, E.M., Deivanayagam, C.C.S., Le, B., Anderson, A., Matsuka, Y., Lin, S.L., Foster, T.J., Narayana, SV.L., Hook, M.

To be published.

Macromolecule Content

Total Structure Weight: 37.85 kDa
Atom Count: 2,653
Modeled Residue Count: 331
Deposited Residue Count: 343
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Clumping factor B	A	328	Staphylococcus aureus subsp. aureus N315	Mutation(s): 1 Gene Names: clfB, SA2423
UniProt
Find proteins for Q7A382 (Staphylococcus aureus (strain N315)) Explore Q7A382 Go to UniProtKB: Q7A382
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q7A382
Sequence Annotations Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Tail region derived peptide	B	15	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P13645 (Homo sapiens) Explore P13645 Go to UniProtKB: P13645
PHAROS: P13645 GTEx: ENSG00000186395
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P13645
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.219 (Depositor), 0.204 (DCC)
R-Value Work: 0.182 (Depositor)
R-Value Observed: 0.184 (Depositor)

Space Group: P 4₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 85.598	α = 90
b = 85.598	β = 90
c = 84.795	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
CrystalClear	data collection
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2011-05-04

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-05-04
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2024-03-13
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.