☰ Navigation Tabs
Structural and biochemical characterization of ClfB:ligand interactions
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8 298 0.9M sodium citrate, 90mM imidazole pH 8.0 , VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 4.1 70.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.598 α = 90 b = 85.598 β = 90 c = 84.795 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 20 18830
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 20 18813 973 99.63 0.1836 0.1817 0.2187 0.2038 RANDOM 38.2061
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 -0.07 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.095 r_dihedral_angle_4_deg 14.697 r_dihedral_angle_3_deg 14.272 r_dihedral_angle_1_deg 5.429 r_scangle_it 3.113 r_mcangle_it 2.904 r_scbond_it 2.22 r_mcbond_it 1.956 r_angle_refined_deg 1.641 r_nbtor_refined 0.322
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.095 r_dihedral_angle_4_deg 14.697 r_dihedral_angle_3_deg 14.272 r_dihedral_angle_1_deg 5.429 r_scangle_it 3.113 r_mcangle_it 2.904 r_scbond_it 2.22 r_mcbond_it 1.956 r_angle_refined_deg 1.641 r_nbtor_refined 0.322 r_symmetry_vdw_refined 0.236 r_nbd_refined 0.231 r_xyhbond_nbd_refined 0.158 r_chiral_restr 0.107 r_symmetry_hbond_refined 0.063 r_bond_refined_d 0.019 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2519 Nucleic Acid Atoms Solvent Atoms 134 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection HKL-2000 data reduction HKL-2000 data scaling PHASER phasing