Ab initio fragment molecular orbital study of ligand binding to leukocyte-specific protein tyrosine (LCK) kinase
Ozawa, M., Ozawa, T., Tsuji, E., Okazaki, K., Takeda, K.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Proto-oncogene tyrosine-protein kinase LCK | 285 | Homo sapiens | Mutation(s): 0  Gene Names: LCK EC: 2.7.10.2 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P06239 (Homo sapiens) Explore P06239  Go to UniProtKB:  P06239 | |||||
PHAROS:  P06239 GTEx:  ENSG00000182866  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P06239 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
KBM Query on KBM | F [auth A] | (4-chlorophenyl)(5-methoxy-1-benzofuran-2-yl)methanone C16 H11 Cl O3 SVQLTYVFAXKBMP-UHFFFAOYSA-N | |||
MPD Query on MPD | E [auth A] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N | |||
SO4 Query on SO4 | B [auth A], C [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
DMS Query on DMS | D [auth A] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
PTR Query on PTR | A | L-PEPTIDE LINKING | C9 H12 N O6 P | TYR |
Length ( Å ) | Angle ( ˚ ) |
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a = 42.277 | α = 90 |
b = 73.612 | β = 90 |
c = 92.76 | γ = 90 |
Software Name | Purpose |
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BSS | data collection |
AMoRE | phasing |
REFMAC | refinement |
MOSFLM | data reduction |
SCALA | data scaling |