Crystal structure of Phosphohydrolase (BT4208) from Bacteroides thetaiotaomicron VPI-5482 at 2.20 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
Find similar proteins by: Sequence  |  Structure
Entity ID: 1 | ||||
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Molecule | Chains | Sequence Length | Organism | Details |
Phosphohydrolase | A, B, C, D, E, F, G, H | 410 | Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) | Mutation(s): 0  |
Find proteins for Q8A013 (Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)) Go to UniProtKB:  Q8A013 |
Ligands 4 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ADP Query on ADP | A, B, C, D, E, F, G, H | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N | ![]() |  Ligand Interaction | |
CL Query on CL | A, C, D | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | ![]() |  Ligand Interaction | |
GOL Query on GOL | B, D, H | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | ![]() |  Ligand Interaction | |
EDO Query on EDO | A, C, E, G | 1,2-ETHANEDIOL ETHYLENE GLYCOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | ![]() |  Ligand Interaction |
Modified Residues  1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B, C, D, E, F, G, H | L-PEPTIDE LINKING | C5 H11 N O2 Se | ![]() | MET |
Length (Å) | Angle (°) |
---|---|
a = 115.436 | α = 90.00 |
b = 137.504 | β = 90.00 |
c = 279.051 | γ = 90.00 |
Software Name | Purpose |
---|---|
autoSHARP | phasing |
XDS | data reduction |
REFMAC | refinement |
MolProbity | model building |
MAR345 | data collection |
SHELXD | phasing |
SHELX | phasing |
PHENIX | refinement |
XSCALE | data scaling |
PDB_EXTRACT | data extraction |