2MUB

Solution structure of the analgesic sea anemone peptide APETx2


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: Best MolProbity score 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Understanding the Molecular Basis of Toxin Promiscuity: The Analgesic Sea Anemone Peptide APETx2 Interacts with Acid-Sensing Ion Channel 3 and hERG Channels via Overlapping Pharmacophores.

Jensen, J.E.Cristofori-Armstrong, B.Anangi, R.Rosengren, K.J.Lau, C.H.Mobli, M.Brust, A.Alewood, P.F.King, G.F.Rash, L.D.

(2014) J.Med.Chem. 57: 9195-9203

  • DOI: 10.1021/jm501400p

  • PubMed Abstract: 
  • The sea anemone peptide APETx2 is a potent and selective blocker of acid-sensing ion channel 3 (ASIC3). APETx2 is analgesic in a variety of rodent pain models, but the lack of knowledge of its pharmacophore and binding site on ASIC3 has impeded devel ...

    The sea anemone peptide APETx2 is a potent and selective blocker of acid-sensing ion channel 3 (ASIC3). APETx2 is analgesic in a variety of rodent pain models, but the lack of knowledge of its pharmacophore and binding site on ASIC3 has impeded development of improved analogues. Here we present a detailed structure-activity relationship study of APETx2. Determination of a high-resolution structure of APETx2 combined with scanning mutagenesis revealed a cluster of aromatic and basic residues that mediate its interaction with ASIC3. We show that APETx2 also inhibits the off-target hERG channel by reducing the maximal current amplitude and shifting the voltage dependence of activation to more positive potentials. Electrophysiological screening of selected APETx2 mutants revealed partial overlap between the surfaces on APETx2 that mediate its interaction with ASIC3 and hERG. Characterization of the molecular basis of these interactions is an important first step toward the rational design of more selective APETx2 analogues.


    Related Citations: 
    • Solution structure of APETx2, a specific peptide inhibitor of ASIC3 proton-gated channels.
      Chagot, B.,Escoubas, P.,Diochot, S.,Bernard, C.,Lazdunski, M.,Darbon, H.
      (2005) Protein Sci. 14: 2003
    • Chemical synthesis and folding of APETx2, a potent and selective inhibitor of acid sensing ion channel 3.
      Jensen, J.E.,Durek, T.,Alewood, P.F.,Adams, D.J.,King, G.F.,Rash, L.D.
      (2009) Toxicon 54: 56


    Organizational Affiliation

    Institute for Molecular Bioscience, ‡School of Biomedical Sciences, and §Centre for Advanced Imaging, The University of Queensland , St Lucia, QLD 4072, Australia.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Toxin APETx2
A
42Anthopleura elegantissimaN/A
Find proteins for P61542 (Anthopleura elegantissima)
Go to UniProtKB:  P61542
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: Best MolProbity score 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-12-24
    Type: Initial release
  • Version 1.1: 2016-06-01
    Type: Structure summary