2MUB

Solution structure of the analgesic sea anemone peptide APETx2


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: Best MolProbity score 

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This is version 1.1 of the entry. See complete history


Literature

Understanding the Molecular Basis of Toxin Promiscuity: The Analgesic Sea Anemone Peptide APETx2 Interacts with Acid-Sensing Ion Channel 3 and hERG Channels via Overlapping Pharmacophores.

Jensen, J.E.Cristofori-Armstrong, B.Anangi, R.Rosengren, K.J.Lau, C.H.Mobli, M.Brust, A.Alewood, P.F.King, G.F.Rash, L.D.

(2014) J Med Chem 57: 9195-9203

  • DOI: 10.1021/jm501400p
  • Primary Citation of Related Structures:  
    2MUB

  • PubMed Abstract: 
  • The sea anemone peptide APETx2 is a potent and selective blocker of acid-sensing ion channel 3 (ASIC3). APETx2 is analgesic in a variety of rodent pain models, but the lack of knowledge of its pharmacophore and binding site on ASIC3 has impeded development of improved analogues ...

    The sea anemone peptide APETx2 is a potent and selective blocker of acid-sensing ion channel 3 (ASIC3). APETx2 is analgesic in a variety of rodent pain models, but the lack of knowledge of its pharmacophore and binding site on ASIC3 has impeded development of improved analogues. Here we present a detailed structure-activity relationship study of APETx2. Determination of a high-resolution structure of APETx2 combined with scanning mutagenesis revealed a cluster of aromatic and basic residues that mediate its interaction with ASIC3. We show that APETx2 also inhibits the off-target hERG channel by reducing the maximal current amplitude and shifting the voltage dependence of activation to more positive potentials. Electrophysiological screening of selected APETx2 mutants revealed partial overlap between the surfaces on APETx2 that mediate its interaction with ASIC3 and hERG. Characterization of the molecular basis of these interactions is an important first step toward the rational design of more selective APETx2 analogues.


    Related Citations: 
    • Solution structure of APETx2, a specific peptide inhibitor of ASIC3 proton-gated channels.
      Chagot, B., Escoubas, P., Diochot, S., Bernard, C., Lazdunski, M., Darbon, H.
      (2005) Protein Sci 14: 2003
    • Chemical synthesis and folding of APETx2, a potent and selective inhibitor of acid sensing ion channel 3.
      Jensen, J.E., Durek, T., Alewood, P.F., Adams, D.J., King, G.F., Rash, L.D.
      (2009) Toxicon 54: 56

    Organizational Affiliation

    Institute for Molecular Bioscience, ‡School of Biomedical Sciences, and §Centre for Advanced Imaging, The University of Queensland , St Lucia, QLD 4072, Australia.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Toxin APETx2A42Anthopleura elegantissimaMutation(s): 0 
UniProt
Find proteins for P61542 (Anthopleura elegantissima)
Explore P61542 
Go to UniProtKB:  P61542
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: Best MolProbity score 
  • OLDERADO: 2MUB Olderado

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-12-24
    Type: Initial release
  • Version 1.1: 2016-06-01
    Changes: Structure summary