2Z5Y

Crystal Structure of Human Monoamine Oxidase A (G110A) with Harmine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.17 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.193 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure of human monoamine oxidase A at 2.2-A resolution: The control of opening the entry for substrates/inhibitors

Son, S.Y.Ma, J.Kondou, Y.Yoshimura, M.Yamashita, E.Tsukihara, T.

(2008) Proc.Natl.Acad.Sci.Usa 105: 5739-5744

  • DOI: 10.1073/pnas.0710626105
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • The mitochondrial outer membrane-anchored monoamine oxidase (MAO) is a biochemically important flavoenzyme that catalyzes the deamination of biogenic and xenobiotic amines. Its two subtypes, MAOA and MAOB, are linked to several psychiatric disorders ...

    The mitochondrial outer membrane-anchored monoamine oxidase (MAO) is a biochemically important flavoenzyme that catalyzes the deamination of biogenic and xenobiotic amines. Its two subtypes, MAOA and MAOB, are linked to several psychiatric disorders and therefore are interesting targets for drug design. To understand the relationship between structure and function of this enzyme, we extended our previous low-resolution rat MAOA structure to the high-resolution wild-type and G110A mutant human MAOA structures at 2.2 and 2.17 A, respectively. The high-resolution MAOA structures are similar to those of rat MAOA and human MAOB, but different from the known structure of human MAOA [De Colibus L, et al. (2005) Proc Natl Acad Sci USA 102:12684-12689], specifically regarding residues 108-118 and 210-216, which surround the substrate/inhibitor cavity. The results confirm that the inhibitor selectivity of MAOA and MAOB is caused by the structural differences arising from Ile-335 in MAOA vs. Tyr-326 in MAOB. The structures exhibit a C-terminal transmembrane helix with clear electron density, as is also seen in rat MAOA. Mutations on one residue of loop 108-118, G110, which is far from the active center but close to the membrane surface, cause the solubilized enzyme to undergo a dramatic drop in activity, but have less effect when the enzyme is anchored in the membrane. These results suggest that the flexibility of loop 108-118, facilitated by anchoring the enzyme into the membrane, is essential for controlling substrate access to the active site. We report on the observation of the structure-function relationship between a transmembrane helical anchor and an extra-membrane domain.


    Organizational Affiliation

    Laboratory of Protein Crystallography, Institute for Protein Research, Osaka University, Yamadaoka 3-2, Suita, Osaka 565-0871, Japan.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Amine oxidase [flavin-containing] A
A
513Homo sapiensMutations: A99G
Gene Names: MAOA
EC: 1.4.3.4
Membrane protein
mpstruct
Group: 
MONOTOPIC MEMBRANE PROTEINS
Sub Group: 
Oxidases
Protein: 
Monoamine Oxidase A with bound Clorglycine
Find proteins for P21397 (Homo sapiens)
Go to Gene View: MAOA
Go to UniProtKB:  P21397
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
DCX
Query on DCX

Download SDF File 
Download CCD File 
A
DECYL(DIMETHYL)PHOSPHINE OXIDE
DIMETHYLDECYLPHOSPHINE OXIDE
C12 H27 O P
GSVLCKASFMVUSW-UHFFFAOYSA-N
 Ligand Interaction
FAD
Query on FAD

Download SDF File 
Download CCD File 
A
FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
 Ligand Interaction
HRM
Query on HRM

Download SDF File 
Download CCD File 
A
7-METHOXY-1-METHYL-9H-BETA-CARBOLINE
7-METHOXY-1-METHYL-9H-PYRIDO[3,4-B]INDOL, HARMINE
C13 H12 N2 O
BXNJHAXVSOCGBA-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
HRMKi: 5 - 17 nM (99) BINDINGDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.17 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.193 
  • Space Group: C 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 135.547α = 90.00
b = 217.364β = 90.00
c = 54.804γ = 90.00
Software Package:
Software NamePurpose
SCALAdata scaling
MOSFLMdata reduction
MOLREPphasing
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-04-01
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance