2Z3A | pdb_00002z3a

Crystal Structure of Bacillus Subtilis CodW, a non-canonical HslV-like peptidase with an impaired catalytic apparatus

PDB DOI: https://doi.org/10.2210/pdb2Z3A/pdb

Classification: HYDROLASE
Organism(s): Bacillus subtilis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-06-03 Released: 2008-03-25
Deposition Author(s): Rho, S.H., Park, H.H., Kang, G.B., Lim, Y.J., Kang, M.S., Lim, B.K., Seong, I.S., Chung, C.H., Wang, J., Eom, S.H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.00 Å
R-Value Free:
0.266 (Depositor), 0.260 (DCC)
R-Value Work:
0.245 (Depositor), 0.242 (DCC)
R-Value Observed:
0.247 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 2Z3A

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of Bacillus subtilis CodW, a noncanonical HslV-like peptidase with an impaired catalytic apparatus

Rho, S.H., Park, H.H., Kang, G.B., Im, Y.J., Kang, M.S., Lim, B.K., Seong, I.S., Seol, J., Chung, C.H., Wang, J., Eom, S.H.

(2007) Proteins 71: 1020-1026

PubMed: 17979190 Search on PubMed
DOI: https://doi.org/10.1002/prot.21758
Primary Citation Related Structures:
2Z3A, 2Z3B

Organizational Affiliation

Department of Life Science, Cell Dynamics Research Center, Gwangju Institute of Science and Technology, Gwangju 500-712, Korea.

Macromolecule Content

Total Structure Weight: 232.47 kDa
Atom Count: 16,414
Modeled Residue Count: 2,160
Deposited Residue Count: 2,160
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP-dependent protease hslV	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	180	Bacillus subtilis	Mutation(s): 0 EC: 3.4.25 (PDB Primary Data), 3.4.21 (UniProt)
UniProt
Find proteins for P39070 (Bacillus subtilis (strain 168)) Explore P39070 Go to UniProtKB: P39070
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P39070
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.00 Å
R-Value Free: 0.266 (Depositor), 0.260 (DCC)
R-Value Work: 0.245 (Depositor), 0.242 (DCC)
R-Value Observed: 0.247 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.13	α = 90
b = 164.42	β = 111.53
c = 95.9	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
DENZO	data reduction
SCALEPACK	data scaling
MOSFLM	data reduction
SCALA	data scaling
CNS	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2008-03-25

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2008-03-25
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2017-10-11
Changes: Refinement description
Version 1.3: 2024-03-13
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.