2XKX

Single particle analysis of PSD-95 in negative stain


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 22.9 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

  • Method: SOLUTION SCATTERING

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Self-Directed Assembly and Clustering of the Cytoplasmic Domains of Inwardly Rectifying Kir2.1 Potassium Channels on Association with Psd-95

Fomina, S.Howard, T.D.Sleator, O.K.Golovanova, M.O'Ryan, L.Leyland, M.L.Grossmann, J.G.Collins, R.F.Prince, S.M.

(2011) Biochim Biophys Acta 1808: 2374

  • DOI: 10.1016/j.bbamem.2011.06.021
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • The interaction of the extra-membranous domain of tetrameric inwardly rectifying Kir2.1 ion channels (Kir2.1NC(4)) with the membrane associated guanylate kinase protein PSD-95 has been studied using Transmission Electron Microscopy in negative stain. ...

    The interaction of the extra-membranous domain of tetrameric inwardly rectifying Kir2.1 ion channels (Kir2.1NC(4)) with the membrane associated guanylate kinase protein PSD-95 has been studied using Transmission Electron Microscopy in negative stain. Three types of complexes were observed in electron micrographs corresponding to a 1:1 complex, a large self-enclosed tetrad complex and extended chains of linked channel domains. Using models derived from small angle X-ray scattering experiments in which high resolution structures from X-ray crystallographic and Nuclear Magnetic Resonance studies are positioned, the envelopes from single particle analysis can be resolved as a Kir2.1NC(4):PSD-95 complex and a tetrad of this unit (Kir2.1NC(4):PSD-95)(4). The tetrad complex shows the close association of the Kir2.1 cytoplasmic domains and the influence of PSD-95 mediated self-assembly on the clustering of these channels.


    Related Citations: 
    • Supramodular Structure and Synergistic Target Binding of the N-Terminal Tandem Pdz Domains of Psd-95.
      Long, J., Tochio, H., Wang, P., Fan, J., Sala, C., Niethammer, M., Sheng, M., Zhang, M.
      (2003) J Mol Biol 327: 203
    • Solution Structure and Backbone Dynamics of the Second Pdz Domain of Postsynaptic Density-95.
      Tochio, H., Hung, F., Li, M., Bredt, D.S., Zhang, M.
      (2000) J Mol Biol 295: 225
    • Structure of the Third Pdz Domain of Psd-95 Protein Complexed with Kketwv Peptide Ligand
      Saro, D., Wawrzak, Z., Martin, P., Vickrey, J., Paredes, A., Kovari, L., Spaller, M.
      () To be published --: --
    • Structure of the SH3-Guanylate Kinase Module from Psd-95 Suggests a Mechanism for Regulated Assembly of Maguk Scaffolding Proteins.
      Mcgee, A.W., Dakoji, S.R., Olsen, O., Bredt, D.S., Lim, W.A., Prehoda, K.E.
      (2001) Mol Cell 8: 1291

    Organizational Affiliation

    University of Manchester, Manchester Interdisciplinary Biocentre, Manchester M1 7DN, UK.



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
DISKS LARGE HOMOLOG 4A, B721Rattus norvegicusMutation(s): 3 
Gene Names: Dlg4Dlgh4Psd95
Find proteins for P31016 (Rattus norvegicus)
Explore P31016 
Go to UniProtKB:  P31016
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 22.9 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
  • Method: SOLUTION SCATTERING

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-07-20
    Type: Initial release
  • Version 1.1: 2011-08-10
    Changes: Database references
  • Version 1.2: 2017-08-30
    Changes: Data collection
  • Version 1.3: 2019-11-13
    Changes: Data collection, Other