2WJS | pdb_00002wjs

Crystal structure of the LG1-3 region of the laminin alpha2 chain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 
    0.266 (Depositor), 0.258 (DCC) 
  • R-Value Work: 
    0.212 (Depositor), 0.206 (DCC) 
  • R-Value Observed: 
    0.212 (Depositor) 

Starting Model: experimental
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Ligand Structure Quality Assessment 


This is version 1.5 of the entry. See complete history

Literature

Crystal Structure of the Lg1-3 Region of the Laminin {Alpha}2 Chain.

Carafoli, F.Clout, N.J.Hohenester, E.

(2009) J Biological Chem 284: 22786

  • DOI: https://doi.org/10.1074/jbc.M109.026658
  • Primary Citation Related Structures: 
    2WJS

  • PubMed Abstract: 

    Laminins are large heterotrimeric glycoproteins with many essential functions in basement membrane assembly and function. Cell adhesion to laminins is mediated by a tandem of five laminin G-like (LG) domains at the C terminus of the alpha chain. Integrin binding requires an intact LG1-3 region, as well as contributions from the coiled coil formed by the alpha, beta, and gamma chains. We have determined the crystal structure at 2.8-A resolution of the LG1-3 region of the laminin alpha2 chain (alpha 2LG1-3). The three LG domains adopt typical beta-sandwich folds, with canonical calcium binding sites in LG1 and LG2. LG2 and LG3 interact through a substantial interface, but LG1 is completely dissociated from the LG2-3 pair. We suggest that the missing gamma chain tail may be required to stabilize the interaction between LG1 and LG2-3 in the biologically active conformation. A global analysis of N-linked glycosylation sites shows that the beta-sandwich faces of LG1 are free of carbohydrate modifications in all five laminin alpha chains, suggesting that these surfaces may harbor the integrin binding site. The alpha 2LG1-3 structure provides the first atomic view of the integrin binding region of laminins.


  • Organizational Affiliation
    • Department of Life Sciences, Imperial College London, London SW7 2AZ, United Kingdom.

Macromolecule Content 

  • Total Structure Weight: 68.18 kDa 
  • Atom Count: 4,056 
  • Modeled Residue Count: 520 
  • Deposited Residue Count: 608 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
LAMININ SUBUNIT ALPHA-2608Mus musculusMutation(s): 0 
UniProt
Find proteins for Q60675 (Mus musculus)
Explore Q60675 
Go to UniProtKB:  Q60675
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ60675
Glycosylation
Glycosylation Sites: 4Go to GlyGen: Q60675-1
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free:  0.266 (Depositor), 0.258 (DCC) 
  • R-Value Work:  0.212 (Depositor), 0.206 (DCC) 
  • R-Value Observed: 0.212 (Depositor) 
Space Group: P 65
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 138.829α = 90
b = 138.829β = 90
c = 73.895γ = 120
Software Package:
Software NamePurpose
CNSrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-06-23
    Type: Initial release
  • Version 1.1: 2011-05-08
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Data collection, Derived calculations, Other, Structure summary
  • Version 1.4: 2023-12-13
    Changes: Data collection, Database references, Refinement description, Structure summary
  • Version 1.5: 2024-11-13
    Changes: Structure summary