2TMP

N-TERMINAL DOMAIN OF TISSUE INHIBITOR OF METALLOPROTEINASE-2 (N-TIMP-2), NMR, 49 STRUCTURES


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 49 
  • Selection Criteria: LEAST RESTRAINT VIOLATION 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

High resolution structure of the N-terminal domain of tissue inhibitor of metalloproteinases-2 and characterization of its interaction site with matrix metalloproteinase-3.

Muskett, F.W.Frenkiel, T.A.Feeney, J.Freedman, R.B.Carr, M.D.Williamson, R.A.

(1998) J.Biol.Chem. 273: 21736-21743


  • PubMed Abstract: 
  • The high resolution structure of the N-terminal domain of tissue inhibitor of metalloproteinases-2 (N-TIMP-2) in solution has been determined using multidimensional heteronuclear NMR spectroscopy, with the structural calculations based on an extensiv ...

    The high resolution structure of the N-terminal domain of tissue inhibitor of metalloproteinases-2 (N-TIMP-2) in solution has been determined using multidimensional heteronuclear NMR spectroscopy, with the structural calculations based on an extensive set of constraints, including 3132 nuclear Overhauser effect-based distance constraints, 56 hydrogen bond constraints, and 220 torsion angle constraints (an average of 26.9 constraints/residue). The core of the protein consists of a five-stranded beta-barrel that is homologous to the beta-barrel found in the oligosaccharide/oligonucleotide binding protein fold. The binding site for the catalytic domain of matrix metalloproteinases-3 (N-MMP-3) on N-TIMP-2 has been mapped by determining the changes in chemical shifts on complex formation for signals from the protein backbone (15N, 13C, and 1H). This approach identified a discrete N-MMP-3 binding site on N-TIMP-2 composed of the N terminus of the protein and the loops between beta-strands AB, CD, and EF. The beta-hairpin formed from strands A and B in N-TIMP-2 is significantly longer than the equivalent structure in TIMP-1, allowing it to make more extensive binding interactions with the MMP catalytic domain. A detailed comparison of the N-TIMP-2 structure with that of TIMP-1 bound to N-MMP-3 (Gomis-Ruth, F.-X., Maskos, K., Betz, M., Bergner, A., Huber, R., Suzuki, K., Yoshida, N., Nagase, H. , Brew, K., Bourne, G. P., Bartunik, H. & Bode, W. (1997) Nature 389, 77-80) revealed that the core beta-barrels are very similar in topology but that the loop connecting beta-strands CD (P67-C72) would need to undergo a large conformational change for TIMP-2 to bind in a similar manner to TIMP-1.


    Related Citations: 
    • Mapping the Binding Site for Matrix Metalloproteinase on the N-Terminal Domain of the Tissue Inhibitor of Metalloproteinases-2 by NMR Chemical Shift Perturbation
      Williamson, R.A.,Carr, M.D.,Frenkiel, T.A.,Feeney, J.,Freedman, R.B.
      (1997) Biochemistry 36: 13882
    • Solution Structure of the Active Domain of Tissue Inhibitor of Metalloproteinases-2. A New Member of the Ob Fold Protein Family
      Williamson, R.A.,Martorell, G.,Carr, M.D.,Murphy, G.,Docherty, A.J.,Freedman, R.B.,Feeney, J.
      (1994) Biochemistry 33: 11745
    • Chemically and Conformationally Authentic Active Domain of Human Tissue Inhibitor of Metalloproteinases-2 Refolded from Bacterial Inclusion Bodies
      Williamson, R.A.,Natalia, D.,Gee, C.K.,Murphy, G.,Carr, M.D.,Freedman, R.B.
      (1996) Eur.J.Biochem. 241: 476
    • Disulphide Bond Assignment in Human Tissue Inhibitor of Metalloproteinases (Timp)
      Williamson, R.A.,Marston, F.A.,Angal, S.,Koklitis, P.,Panico, M.,Morris, H.R.,Carne, A.F.,Smith, B.J.,Harris, T.J.,Freedman, R.B.
      (1990) Biochem.J. 268: 267


    Organizational Affiliation

    Department of Biosciences, University of Kent, Canterbury, Kent, CT2 7NJ, United Kingdom.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
TISSUE INHIBITOR OF METALLOPROTEINASES-2
A
127Homo sapiensMutation(s): 0 
Gene Names: TIMP2
Find proteins for P16035 (Homo sapiens)
Go to Gene View: TIMP2
Go to UniProtKB:  P16035
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 49 
  • Selection Criteria: LEAST RESTRAINT VIOLATION 
  • Olderado: 2TMP Olderado
Software Package:
Software NamePurpose
DYANArefinement
DYANAmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1998-12-09
    Type: Initial release
  • Version 1.1: 2008-03-25
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance