Download MendeleyCrystal Structure of the Putative Phosphohistidine Phosphatase SixA from Agrobacterium tumefaciens.
Kim, Y., Binkowski, T., Xu, X., Gu, J., Que, Q., Savchenko, A., Edwards, A.M., Joachimiak, A.To be published.
2RFL | pdb_00002rfl
2RFL | pdb_00002rfl
Crystal structure of the putative phosphohistidine phosphatase SixA from Agrobacterium tumefaciens
- PDB DOI: https://doi.org/10.2210/pdb2RFL/pdb
- Classification: HYDROLASE, ISOMERASE
- Organism(s): Agrobacterium fabrum str. C58
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2007-10-01 Released: 2007-10-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.35 Å
- R-Value Free: 0.283 (Depositor), 0.281 (DCC)
- R-Value Work: 0.230 (Depositor), 0.230 (DCC)
- R-Value Observed: 0.236 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecule Content
- Total Structure Weight: 153.76 kDa
- Atom Count: 10,362
- Modeled Residue Count: 1,212
- Deposited Residue Count: 1,384
- Unique protein chains: 1
Macromolecules
Find similar proteins by:
| 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative phosphohistidine phosphatase SixA | 173 | Agrobacterium fabrum str. C58 | Mutation(s): 0 Gene Names: AGR_C_2511, Atu1358 EC: 5.4.2.1 (PDB Primary Data), 3.1.3.13 (PDB Primary Data), 5.4.2.4 (PDB Primary Data) |  | |
UniProt | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A9CJ67 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Download:Ideal Coordinates CCD File | J [auth A], L [auth G] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| ACY Download:Ideal Coordinates CCD File | K [auth D] | ACETIC ACID C2 H4 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-N |  | ||
| SCN Download:Ideal Coordinates CCD File | I [auth A] | THIOCYANATE ION C N S ZMZDMBWJUHKJPS-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D, E A, B, C, D, E, F, G, H | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.35 Å
- R-Value Free: 0.283 (Depositor), 0.281 (DCC)
- R-Value Work: 0.230 (Depositor), 0.230 (DCC)
- R-Value Observed: 0.236 (Depositor)
Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 58.966 | α = 90 |
| b = 201.503 | β = 113.98 |
| c = 72.717 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SBC-Collect | data collection |
| HKL-2000 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| HKL-3000 | phasing |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2007-10-23 Deposition Author(s): Kim, Y., Binkowski, T., Xu, X., Edwards, A.M., Savchenko, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2007-10-23
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2024-10-30
Changes: Data collection, Database references, Derived calculations, Structure summary
