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Crystal structure of the putative phosphohistidine phosphatase SixA from Agrobacterium tumefaciens
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 295 0.2 M Thiocyanate, 20 % PEG 3350, 2 % Sucrose, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.57 52.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.966 α = 90 b = 201.503 β = 113.98 c = 72.717 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2007-08-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9796 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 50 97.5 0.116 10.1 4 63011 63011 40.75
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.43 85.6 0.422 1.8 2.1 5485
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.35 47.25 56318 56318 6323 97.58 0.236 0.236 0.23 0.2297 0.283 0.2812 RANDOM 45.693
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.02 -0.83 1.78 -1.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.143 r_dihedral_angle_4_deg 21.924 r_dihedral_angle_3_deg 21.715 r_dihedral_angle_1_deg 7.928 r_scangle_it 6.365 r_scbond_it 4.216 r_mcangle_it 3.121 r_mcbond_it 2.037 r_angle_refined_deg 1.806 r_symmetry_vdw_refined 0.344
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.143 r_dihedral_angle_4_deg 21.924 r_dihedral_angle_3_deg 21.715 r_dihedral_angle_1_deg 7.928 r_scangle_it 6.365 r_scbond_it 4.216 r_mcangle_it 3.121 r_mcbond_it 2.037 r_angle_refined_deg 1.806 r_symmetry_vdw_refined 0.344 r_symmetry_hbond_refined 0.327 r_nbtor_refined 0.319 r_nbd_refined 0.266 r_xyhbond_nbd_refined 0.24 r_chiral_restr 0.125 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9516 Nucleic Acid Atoms Solvent Atoms 581 Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing PHENIX phasing