2RDP

The structure of a MarR family protein from Bacillus stearothermophilus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.211 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The structure of a MarR family protein from Bacillus stearothermophilus.

Cuff, M.E.Duggan, E.Dementieva, I.Moy, S.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
putative transcriptional regulator MarR
A
150Geobacillus stearothermophilusMutation(s): 0 
Find proteins for D0VWY6 (Geobacillus stearothermophilus)
Go to UniProtKB:  D0VWY6
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
NA
Query on NA

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Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
BME
Query on BME

Download SDF File 
Download CCD File 
A
BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.211 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 73.643α = 90.00
b = 73.643β = 90.00
c = 90.432γ = 90.00
Software Package:
Software NamePurpose
SOLVEphasing
HKL-3000data scaling
SCALEPACKdata scaling
REFMACrefinement
CCP4phasing
HKL-3000phasing
SBC-Collectdata collection
HKL-3000data reduction
DMphasing
ARP/wARPmodel building
SHELXDphasing
RESOLVEphasing
MLPHAREphasing
PDB_EXTRACTdata extraction
DENZOdata reduction
SHELXEmodel building
Omodel building
Cootmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-11-13
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Version format compliance
  • Version 1.2: 2017-10-25
    Type: Refinement description