☰ Navigation Tabs
The structure of a MarR family protein from Bacillus stearothermophilus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.2 291 0.056M NaH2PO4, 1.344M K2HPO4, pH 8.2, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.44 64.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.643 α = 90 b = 73.643 β = 90 c = 90.432 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2006-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97906 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 97.3 0.084 9.2 6.7 11316 11316 -3 61.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 89.8 0.587 2.3 4.7 1025
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 34.1 11228 11228 544 97.04 0.213 0.213 0.211 0.2117 0.253 0.2506 RANDOM 58.148
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.84 -1.84 3.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.21 r_dihedral_angle_4_deg 21.654 r_dihedral_angle_3_deg 17.378 r_dihedral_angle_1_deg 5.156 r_scangle_it 4.635 r_scbond_it 2.887 r_mcangle_it 1.648 r_angle_refined_deg 1.583 r_mcbond_it 0.792 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.21 r_dihedral_angle_4_deg 21.654 r_dihedral_angle_3_deg 17.378 r_dihedral_angle_1_deg 5.156 r_scangle_it 4.635 r_scbond_it 2.887 r_mcangle_it 1.648 r_angle_refined_deg 1.583 r_mcbond_it 0.792 r_nbtor_refined 0.302 r_symmetry_vdw_refined 0.209 r_nbd_refined 0.206 r_xyhbond_nbd_refined 0.154 r_symmetry_hbond_refined 0.132 r_chiral_restr 0.097 r_bond_refined_d 0.016 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1148 Nucleic Acid Atoms Solvent Atoms 78 Heterogen Atoms 19
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MLPHARE phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building SOLVE phasing RESOLVE phasing ARP/wARP model building CCP4 phasing O model building Coot model building