2QHV

Structural Basis of Octanoic Acid Recognition by Lipoate-Protein Ligase B


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.207 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structural basis of octanoic acid recognition by lipoate-protein ligase B

Kim, D.J.Lee, S.J.Kim, H.S.Kim, K.H.Lee, H.H.Yoon, H.J.Suh, S.W.

(2008) Proteins 70: 1620-1625


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Lipoyltransferase
A
210Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: lipB
EC: 2.3.1.181
Find proteins for Q5SLQ3 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SLQ3
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
OC9
Query on OC9

Download SDF File 
Download CCD File 
A
OCTAN-1-OL
C8 H18 O
KBPLFHHGFOOTCA-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.207 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 63.670α = 90.00
b = 63.670β = 90.00
c = 113.962γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
HKL-2000data collection
SCALEPACKdata scaling
DENZOdata reduction
HKL-2000data reduction
REFMACrefinement
SOLVEphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-02-26
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Source and taxonomy, Version format compliance
  • Version 1.2: 2017-10-18
    Type: Refinement description