2QFH

Solution Structure of the C-terminal SCR-16/20 fragment of Complement Factor H.


Experimental Data Snapshot

  • Method: SOLUTION SCATTERING

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

The regulatory SCR-1/5 and cell surface-binding SCR-16/20 fragments of factor H reveal partially folded-back solution structures and different self-associative properties.

Okemefuna, A.I.Gilbert, H.E.Griggs, K.M.Ormsby, R.J.Gordon, D.L.Perkins, S.J.

(2008) J.Mol.Biol. 375: 80-101

  • DOI: 10.1016/j.jmb.2007.09.026
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Factor H (FH) is a plasma glycoprotein that plays a central role in regulation of the alternative pathway of complement. It is composed of 20 short complement regulator (SCR) domains. The SCR-1/5 fragment is required for decay acceleration and cofact ...

    Factor H (FH) is a plasma glycoprotein that plays a central role in regulation of the alternative pathway of complement. It is composed of 20 short complement regulator (SCR) domains. The SCR-1/5 fragment is required for decay acceleration and cofactor activity, while the SCR-16/20 fragment possesses binding sites for complement C3d and heparin. X-ray scattering and analytical ultracentrifugation showed that SCR-1/5 was monomeric, while SCR-16/20 formed dimers. The Guinier radius of gyration R(G) of 4.3 nm for SCR-1/5 and those of 4.7 nm and about 7.8 nm for monomeric and dimeric SCR-16/20, respectively, showed that their structures are partially folded back and bent. The distance distribution function P(r) showed that SCR-1/5 has a maximum dimension of 15 nm while monomeric and dimeric SCR-16/20 are 17 nm and about 27 nm long, respectively. The sedimentation coefficient of 2.4 S for SCR-1/5 showed no concentration-dependence, while that for SCR-16/20 was 2.8 S for the monomer and 3.9 S for the dimer. Sedimentation equilibrium data showed that SCR-1/5 is monomeric while SCR-16/20 exhibited a weak monomer-dimer equilibrium with a dissociation constant of 16 microM. The constrained scattering and sedimentation modelling of SCR-1/5 and SCR-16/20 showed that partially folded-back and bent flexible SCR arrangements fitted both data sets better than extended linear arrangements, and that the dimer was best modelled in the SCR-16/20 model by an end-to-end association of two SCR-20 domains. The SCR-1/5 and SCR-16/20 models were conformationally similar to the previously determined partially folded-back structure for intact wild-type FH, hence suggesting a partial explanation of the intact FH structure. Comparison of the SCR-16/20 model with the crystal structure of C3b clarified reasons for the distribution of mutations leading to atypical haemolytic uraemic syndrome.


    Organizational Affiliation

    Department of Biochemistry and Molecular Biology, Darwin Building, University College London, Gower Street, London WC1E 6BT, UK.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Complement factor H
A
333Homo sapiensMutation(s): 0 
Gene Names: CFH (HF, HF1, HF2)
Find proteins for P08603 (Homo sapiens)
Go to Gene View: CFH
Go to UniProtKB:  P08603
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION SCATTERING
Software Package:
Software NamePurpose
GNOMmodel building
INSIGHTrefinement
GNOMphasing
IN-HOUSEdata collection
ID02data scaling
SCTPL7model building
IN-HOUSEdata reduction
SCTPL7phasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-09-25
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance