2Q1Z | pdb_00002q1z

Crystal Structure of Rhodobacter sphaeroides SigE in complex with the anti-sigma ChrR


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 
    0.329 (Depositor), 0.346 (DCC) 
  • R-Value Work: 
    0.284 (Depositor), 0.317 (DCC) 
  • R-Value Observed: 
    0.286 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 2Q1Z

This is version 1.2 of the entry. See complete history

Literature

A conserved structural module regulates transcriptional responses to diverse stress signals in bacteria.

Campbell, E.A.Greenwell, R.Anthony, J.R.Wang, S.Lim, L.Das, K.Sofia, H.J.Donohue, T.J.Darst, S.A.

(2007) Mol Cell 27: 793-805

  • DOI: https://doi.org/10.1016/j.molcel.2007.07.009
  • Primary Citation Related Structures: 
    2Q1Z, 2Z2S

  • PubMed Abstract: 

    A transcriptional response to singlet oxygen in Rhodobacter sphaeroides is controlled by the group IV sigma factor sigma(E) and its cognate anti-sigma ChrR. Crystal structures of the sigma(E)/ChrR complex reveal a modular, two-domain architecture for ChrR. The ChrR N-terminal anti-sigma domain (ASD) binds a Zn(2+) ion, contacts sigma(E), and is sufficient to inhibit sigma(E)-dependent transcription. The ChrR C-terminal domain adopts a cupin fold, can coordinate an additional Zn(2+), and is required for the transcriptional response to singlet oxygen. Structure-based sequence analyses predict that the ASD defines a common structural fold among predicted group IV anti-sigmas. These ASDs are fused to diverse C-terminal domains that are likely involved in responding to specific environmental signals that control the activity of their cognate sigma factor.


  • Organizational Affiliation
    • The Rockefeller University, 1230 York Avenue, New York, NY 10021, USA.

Macromolecule Content 

  • Total Structure Weight: 83.69 kDa 
  • Atom Count: 5,189 
  • Modeled Residue Count: 706 
  • Deposited Residue Count: 758 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
RpoE, ECF SigE
A, C
184Cereibacter sphaeroides 2.4.1Mutation(s): 0 
Gene Names: rpoE
UniProt
Find proteins for Q3IYV6 (Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.))
Explore Q3IYV6 
Go to UniProtKB:  Q3IYV6
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ3IYV6
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Anti-Sigma factor ChrR, transcriptional activator ChrR
B, D
195Cereibacter sphaeroides 2.4.1Mutation(s): 0 
Gene Names: chrR
UniProt
Find proteins for P40685 (Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.))
Explore P40685 
Go to UniProtKB:  P40685
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP40685
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free:  0.329 (Depositor), 0.346 (DCC) 
  • R-Value Work:  0.284 (Depositor), 0.317 (DCC) 
  • R-Value Observed: 0.286 (Depositor) 
Space Group: I 2 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 43.601α = 90
b = 119.64β = 90
c = 280.659γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data collection
DENZOdata reduction
SCALEPACKdata scaling
SHARPphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2007-09-18
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Derived calculations, Refinement description, Source and taxonomy, Version format compliance
  • Version 1.2: 2024-02-21
    Changes: Data collection, Database references, Derived calculations, Refinement description