2PM5

Human alpha-defensin 1 derivative (HNP1)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.200 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Human alpha-defensin 1 derivative (HNP1)

Lubkowski, J.Lu, W.Zou, G.de Leeuw, E.Li, C.Pazgier, M.Zeng, P.Lu, W.Y.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Neutrophil defensin 1 (HNP-1) (HP-1) (HP1) (Defensin, alpha 1)
A, B
30Homo sapiensMutation(s): 3 
Gene Names: DEFA3 (DEF3)
Find proteins for P59666 (Homo sapiens)
Go to Gene View: DEFA3
Go to UniProtKB:  P59666
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
ORN
Query on ORN
A, B
L-PEPTIDE LINKINGC5 H12 N2 O2ALA
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.200 
  • Space Group: P 42 2 2
Unit Cell:
Length (Å)Angle (°)
a = 57.409α = 90.00
b = 57.409β = 90.00
c = 96.967γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
HKL-2000data reduction
HKL-2000data collection
PHASERphasing
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-05-29
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Advisory, Version format compliance