2PC2

Lysozyme Cocrystallized with Tris-dipicolinate Eu complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.538 Å
  • R-Value Free: 0.167 
  • R-Value Work: 0.138 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

A dipicolinate lanthanide complex for solving protein structures using anomalous diffraction

Pompidor, G.Maury, O.Vicat, J.Kahn, R.

(2010) Acta Crystallogr.,Sect.D 66: 762-769


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Lysozyme C
A
129Gallus gallusGene Names: LYZ
EC: 3.2.1.17
Find proteins for P00698 (Gallus gallus)
Go to Gene View: LYZ
Go to UniProtKB:  P00698
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
PDC
Query on PDC

Download SDF File 
Download CCD File 
A
PYRIDINE-2,6-DICARBOXYLIC ACID
DIPICOLINIC ACID
C7 H5 N O4
WJJMNDUMQPNECX-UHFFFAOYSA-N
 Ligand Interaction
EU
Query on EU

Download SDF File 
Download CCD File 
A
EUROPIUM ION
Eu
MGVUQZZTJGLWJV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.538 Å
  • R-Value Free: 0.167 
  • R-Value Work: 0.138 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 50.266α = 90.00
b = 33.779β = 108.22
c = 69.683γ = 90.00
Software Package:
Software NamePurpose
SHARPphasing
SOLOMONphasing
REFMACrefinement
XDSdata reduction
MAR345data collection
PDB_EXTRACTdata extraction
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-04-01
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-10-18
    Type: Refinement description