2P84 | pdb_00002p84

Crystal structure of ORF041 from Bacteriophage 37

PDB DOI: https://doi.org/10.2210/pdb2P84/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Phietavirus pv37
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-03-21 Released: 2007-04-03
Deposition Author(s): Malashkevich, V.N., Toro, R., Sauder, J.M., Schwinn, K.D., Thompson, D.A., Bain, K.T., Adams, J.M., Reyes, C., Lau, C., Gilmore, J., Rooney, I., Wasserman, T., Gheyi, S.R., Emtage, S., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free:
0.273 (Depositor), 0.281 (DCC)
R-Value Work:
0.208 (Depositor), 0.216 (DCC)
R-Value Observed:
0.212 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.6 of the entry. See complete history.

Literature

Crystal structure of the hypothetical protein from Staphylococcus phage 37

Malashkevich, V.N., Toro, R., Sauder, J.M., Thompson, D.A., Bain, K.T., Adams, J.M., Gheyi, T., Lau, C., Gilmore, J., Wasserman, S.R., Schwinn, K.D., Emtage, S., Burley, S.K., Almo, S.C.

To be published.

Macromolecule Content

Total Structure Weight: 17.29 kDa
Atom Count: 1,238
Modeled Residue Count: 133
Deposited Residue Count: 145
Unique protein chains: 1

Macromolecules

Find similar proteins by:

| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ORF041	A	145	Phietavirus pv37	Mutation(s): 0
UniProt
Find proteins for Q4ZC86 (Staphylococcus phage 37) Explore Q4ZC86 Go to UniProtKB: Q4ZC86
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q4ZC86
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.273 (Depositor), 0.281 (DCC)
R-Value Work: 0.208 (Depositor), 0.216 (DCC)
R-Value Observed: 0.212 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.47	α = 90
b = 109.37	β = 90
c = 57.19	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
SHELX	refinement
CCP4	refinement
PDB_EXTRACT	data extraction
MOSFLM	data reduction
CCP4	data scaling
SHELXS	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2007-04-03

Deposition Author(s):

New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History (Full details and data files)

Version 1.0: 2007-04-03
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Derived calculations, Source and taxonomy, Version format compliance
Version 1.3: 2018-11-14
Changes: Data collection, Structure summary
Version 1.4: 2019-07-24
Changes: Data collection, Refinement description
Version 1.5: 2021-02-03
Changes: Database references, Structure summary
Version 1.6: 2024-02-21
Changes: Data collection, Database references