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Crystal structure of ORF041 from Bacteriophage 37
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 295 0.1M HEPES, pH 7.5, 1.4 M tri-sodium citrate, VAPOR DIFFUSION, SITTING DROP, temperature 295K, pH 7.50
Crystal Properties Matthews coefficient Solvent content 2.44 45.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.47 α = 90 b = 109.37 β = 90 c = 57.19 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm SGX-CAT 2007-03-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 24.668 98.5 0.079 0.079 11.2 13.6 16818
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.81 1.92 100 0.33 0.33 1 14
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 18.88 13993 733 0.212 0.208 0.2165 0.273 0.2806 RANDOM 28.38
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 0.09 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.572 r_dihedral_angle_3_deg 16.717 r_dihedral_angle_4_deg 13.949 r_dihedral_angle_1_deg 9.347 r_scangle_it 4.208 r_scbond_it 3.058 r_mcangle_it 2.202 r_mcbond_it 1.872 r_angle_refined_deg 1.816 r_angle_other_deg 1.278
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.572 r_dihedral_angle_3_deg 16.717 r_dihedral_angle_4_deg 13.949 r_dihedral_angle_1_deg 9.347 r_scangle_it 4.208 r_scbond_it 3.058 r_mcangle_it 2.202 r_mcbond_it 1.872 r_angle_refined_deg 1.816 r_angle_other_deg 1.278 r_mcbond_other 0.303 r_symmetry_vdw_other 0.265 r_nbd_refined 0.235 r_symmetry_vdw_refined 0.229 r_chiral_restr 0.223 r_xyhbond_nbd_refined 0.216 r_nbd_other 0.214 r_symmetry_hbond_refined 0.214 r_nbtor_refined 0.19 r_nbtor_other 0.091 r_bond_refined_d 0.021 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1118 Nucleic Acid Atoms Solvent Atoms 102 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SHELX refinement CCP4 refinement PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SHELXS phasing