2P03 | pdb_00002p03

The structure of receptor-associated protein(RAP)


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 
  • Conformers Submitted: 
  • Selection Criteria: energy minimized average structure 

wwPDB Validation 3D Report Full Report

Validation slider image for 2P03

This is version 1.3 of the entry. See complete history

Literature

The structure of receptor-associated protein (RAP).

Lee, D.Walsh, J.D.Migliorini, M.Yu, P.Cai, T.Schwieters, C.D.Krueger, S.Strickland, D.K.Wang, Y.X.

(2007) Protein Sci 16: 1628-1640

  • DOI: https://doi.org/10.1110/ps.072865407
  • Primary Citation Related Structures: 
    2P01, 2P03

  • PubMed Abstract: 

    The receptor-associated protein (RAP) is a molecular chaperone that binds tightly to certain newly synthesized LDL receptor family members in the endoplasmic reticulum (ER) and facilitates their delivery to the Golgi. We have adopted a divide-and-conquer strategy to solve the structures of the individual domains of RAP using NMR spectroscopy. We present here the newly determined structure of domain 2. Based on this structure and the structures of domains 1 and 3, which were solved previously, we utilized experimental small-angle neutron scattering (SANS) data and a novel simulated annealing protocol to characterize the overall structure of RAP. The results reveal that RAP adopts a unique structural architecture consisting of three independent three-helix bundles that are connected by long and flexible linkers. The flexible linkers and the quasi-repetitive structural architecture may allow RAP to adopt various possible conformations when interacting with the LDL receptors, which are also made of repetitive substructure units.


  • Organizational Affiliation
    • Protein-Nucleic Acid Interaction Section, Structural Biophysics Laboratory, National Cancer Institute at Frederick, National Institutes of Health, Frederick, Maryland 21702, USA.

Macromolecule Content 

  • Total Structure Weight: 37.85 kDa 
  • Atom Count: 2,666 
  • Modeled Residue Count: 323 
  • Deposited Residue Count: 323 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Alpha-2-macroglobulin receptor-associated protein323Homo sapiensMutation(s): 0 
Gene Names: LRPAP1
UniProt & NIH Common Fund Data Resources
Find proteins for P30533 (Homo sapiens)
Explore P30533 
Go to UniProtKB:  P30533
PHAROS:  P30533
GTEx:  ENSG00000163956 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP30533
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 
  • Conformers Submitted: 
  • Selection Criteria: energy minimized average structure 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2007-08-21
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2022-03-16
    Changes: Data collection, Database references, Derived calculations
  • Version 1.3: 2024-05-22
    Changes: Data collection