Download MendeleyCrystal structure of a dihydroorotase
Sugadev, R., Kumaran, D., Burley, S.K., Swaminathan, S.To be published.
2OGJ
Crystal structure of a dihydroorotase
- PDB DOI: https://doi.org/10.2210/pdb2OGJ/pdb
- Classification: HYDROLASE
- Organism(s): Agrobacterium fabrum str. C58
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2007-01-05 Released: 2007-02-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.62 Å
- R-Value Free: 0.302
- R-Value Work: 0.256
- R-Value Observed: 0.256
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Dihydroorotase | 417 | Agrobacterium fabrum str. C58 | Mutation(s): 0 Gene Names: Atu3266 EC: 3.1.1 |  | |
UniProt | |||||
Find proteins for Q7CS13 (Agrobacterium fabrum (strain C58 / ATCC 33970)) Explore Q7CS13 Go to UniProtKB: Q7CS13 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7CS13 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| IMD Query on IMD | M [auth C], P [auth D] | IMIDAZOLE C3 H5 N2 RAXXELZNTBOGNW-UHFFFAOYSA-O |  | Ligand Interaction | |
| ZN Query on ZN | G [auth A], H [auth A], I [auth B], J [auth B], K [auth C], | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| KCX Query on KCX | A, B, C, D, E, F | L-PEPTIDE LINKING | C7 H14 N2 O4 |  | LYS |
| MSE Query on MSE | A, B, C, D, E, F | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.62 Å
- R-Value Free: 0.302
- R-Value Work: 0.256
- R-Value Observed: 0.256
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 90.65 | α = 90 |
| b = 139.2 | β = 90 |
| c = 206.13 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| CBASS | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SHELXD | phasing |
| SHARP | phasing |
| ARP/wARP | model building |
Entry History
Deposition Data
- Released Date: 2007-02-20 Deposition Author(s): Sugadev, R., Kumaran, D., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2007-02-20
Type: Initial release - Version 1.1: 2007-10-16
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Source and taxonomy, Version format compliance - Version 1.3: 2021-02-03
Changes: Database references, Derived calculations, Structure summary
