2OEB | pdb_00002oeb

The crystal structure of gene product Af1862 from Archaeoglobus fulgidus

PDB DOI: https://doi.org/10.2210/pdb2OEB/pdb

Classification: Structural genomics, unknown function
Organism(s): Archaeoglobus fulgidus DSM 4304
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2006-12-28 Released: 2007-01-30
Deposition Author(s): Zhang, R., Evdokimova, E., Kagan, O., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.66 Å
R-Value Free:
0.234 (Depositor), 0.240 (DCC)
R-Value Work:
0.185 (Depositor), 0.192 (DCC)
R-Value Observed:
0.188 (Depositor)

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This is version 1.3 of the entry. See complete history.

Literature

The crystal structure of gene product Af1862 from Archaeoglobus fulgidus

Zhang, R., Evdokimova, E., Kagan, O., Savchenko, A., Edwards, A., Joachimiak, A.

To be published.

Macromolecule Content

Total Structure Weight: 17.41 kDa
Atom Count: 1,350
Modeled Residue Count: 152
Deposited Residue Count: 155
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein	A	155	Archaeoglobus fulgidus DSM 4304	Mutation(s): 0 Gene Names: AF_1862
UniProt
Find proteins for O28417 (Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)) Explore O28417 Go to UniProtKB: O28417
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O28417
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.66 Å
R-Value Free: 0.234 (Depositor), 0.240 (DCC)
R-Value Work: 0.185 (Depositor), 0.192 (DCC)
R-Value Observed: 0.188 (Depositor)

Space Group: H 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 73.309	α = 90
b = 73.309	β = 90
c = 147.192	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
SBC-Collect	data collection
HKL-2000	data reduction
HKL-2000	data scaling
HKL-3000	phasing
SHELXE	model building
SOLVE	phasing
RESOLVE	phasing
ARP/wARP	model building

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-01-30

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2007-01-30
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance
Version 1.3: 2023-12-27
Changes: Data collection, Database references, Derived calculations

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.