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The crystal structure of gene product Af1862 from Archaeoglobus fulgidus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 298 0.2M Ammonium Acetate, 0.1M Na Citate, 30% PEG 2K MME, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.19 43.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.309 α = 90 b = 73.309 β = 90 c = 147.192 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2006-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9798 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.66 58.32 96.81 0.055 39.02 9.2 17377 16823 2 2 19
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.66 1.703 93.23 0.531 2.53 7.3 1329
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.66 58.32 17377 16823 914 96.81 0.18755 0.18755 0.18514 0.1921 0.23358 0.2401 RANDOM 18.555
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.69 0.34 0.69 -1.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.573 r_dihedral_angle_4_deg 17.712 r_dihedral_angle_3_deg 14.551 r_dihedral_angle_1_deg 5.397 r_sphericity_free 5.264 r_scangle_it 3.821 r_rigid_bond_restr 3.755 r_sphericity_bonded 2.886 r_scbond_it 2.776 r_mcangle_it 1.773
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.573 r_dihedral_angle_4_deg 17.712 r_dihedral_angle_3_deg 14.551 r_dihedral_angle_1_deg 5.397 r_sphericity_free 5.264 r_scangle_it 3.821 r_rigid_bond_restr 3.755 r_sphericity_bonded 2.886 r_scbond_it 2.776 r_mcangle_it 1.773 r_mcbond_it 1.489 r_angle_refined_deg 1.362 r_angle_other_deg 0.878 r_mcbond_other 0.462 r_symmetry_hbond_refined 0.275 r_symmetry_vdw_other 0.262 r_symmetry_vdw_refined 0.247 r_nbd_refined 0.23 r_nbtor_refined 0.188 r_nbd_other 0.172 r_xyhbond_nbd_refined 0.153 r_xyhbond_nbd_other 0.108 r_nbtor_other 0.086 r_chiral_restr 0.071 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1201 Nucleic Acid Atoms Solvent Atoms 149 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing SHELXE model building SOLVE phasing RESOLVE phasing ARP/wARP model building