Macromolecule Content

Total Structure Weight: 45.76 kDa
Atom Count: 3512
Residue Count: 374
Unique protein chains: 1

2O08

CRYSTAL STRUCTURE OF A PUTATIVE HD SUPERFAMILY HYDROLASE (BH1327) FROM BACILLUS HALODURANS AT 1.90 A RESOLUTION

DOI: 10.2210/pdb2O08/pdb

Classification: HYDROLASE
Organism(s): Alkalihalobacillus halodurans
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2006-11-27 Released: 2006-12-19
Deposition Author(s): Joint Center for Structural Genomics (JCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.223
R-Value Work: 0.174
R-Value Observed: 0.176

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of hypothetical protein (NP_242193.1) from Bacillus halodurans at 1.90 A resolution

Joint Center for Structural Genomics (JCSG)

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
BH1327 protein	A, B	188	Alkalihalobacillus halodurans	Mutation(s): 4 Gene Names: NP_242193.1
Find proteins for Q9KD90 (Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)) Explore Q9KD90 Go to UniProtKB: Q9KD90
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 6 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
DGI Query on DGI Download Ideal Coordinates CCD File SDF format, chain O [B] MOL2 format, chain O [B]	B	2'-DEOXYGUANOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₀ P₂ CIKGWCTVFSRMJU-KVQBGUIXSA-N		Ligand Interaction
PG4 Query on PG4 Download Ideal Coordinates CCD File SDF format, chain G [A] SDF format, chain H [A] SDF format, chain I [A] SDF format, chain J [A] SDF format, chain K [A] SDF format, chain P [B] SDF format, chain Q [B] MOL2 format, chain G [A] MOL2 format, chain H [A] MOL2 format, chain I [A] MOL2 format, chain J [A] MOL2 format, chain K [A] MOL2 format, chain P [B] MOL2 format, chain Q [B]	A, B	TETRAETHYLENE GLYCOL C₈ H₁₈ O₅ UWHCKJMYHZGTIT-UHFFFAOYSA-N		Ligand Interaction
PO4 Query on PO4 Download Ideal Coordinates CCD File SDF format, chain E [A] MOL2 format, chain E [A]	A	PHOSPHATE ION O₄ P NBIIXXVUZAFLBC-UHFFFAOYSA-K		Ligand Interaction
NO3 Query on NO3 Download Ideal Coordinates CCD File SDF format, chain N [B] MOL2 format, chain N [B]	B	NITRATE ION N O₃ NHNBFGGVMKEFGY-UHFFFAOYSA-N		Ligand Interaction
FE Query on FE Download Ideal Coordinates CCD File SDF format, chain C [A] SDF format, chain D [A] SDF format, chain L [B] SDF format, chain M [B] MOL2 format, chain C [A] MOL2 format, chain D [A] MOL2 format, chain L [B] MOL2 format, chain M [B]	A, B	FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N		Ligand Interaction
UNL Query on UNL Download Ideal Coordinates CCD File SDF format, chain F [A] MOL2 format, chain F [A]	A	Unknown ligand VTLYFUHAOXGGBS-UHFFFAOYSA-N		Ligand Interaction

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A,B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.223
R-Value Work: 0.174
R-Value Observed: 0.176
Space Group: C 2 2 2₁
Diffraction Data DOI: 10.18430/M32O08 Protein Diffraction

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 86.83	α = 90
b = 166.51	β = 90
c = 73.41	γ = 90

Software Package:

Software Name	Purpose
MolProbity	model building
SHARP	phasing
REFMAC	refinement
XSCALE	data scaling
PDB_EXTRACT	data extraction
XDS	data reduction
SHELX	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2006-11-27
Released Date: 2006-12-19

Deposition Author(s):

Joint Center for Structural Genomics (JCSG)

Revision History

Version 1.0: 2006-12-19
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Advisory, Version format compliance
Version 1.3: 2017-10-18
Changes: Refinement description
Version 1.4: 2017-10-25
Changes: Author supporting evidence

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.