2NBC

Resonance assignments and structure determination of poneritoxin, omega-PONTX-Ae1a, from Anochetus emarginatus


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 30 
  • Conformers Submitted: 20 
  • Selection Criteria: Best stereochemical property judged by Molprobity 

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Literature

Isolation and characterization of a structurally unique beta-hairpin venom peptide from the predatory ant Anochetus emarginatus.

Touchard, A.Brust, A.Cardoso, F.C.Chin, Y.K.Herzig, V.Jin, A.H.Dejean, A.Alewood, P.F.King, G.F.Orivel, J.Escoubas, P.

(2016) Biochim Biophys Acta 1860: 2553-2562

  • DOI: https://doi.org/10.1016/j.bbagen.2016.07.027
  • Primary Citation of Related Structures:  
    2NBC

  • PubMed Abstract: 

    Most ant venoms consist predominantly of small linear peptides, although some contain disulfide-linked peptides as minor components. However, in striking contrast to other ant species, some Anochetus venoms are composed primarily of disulfide-rich peptides. In this study, we investigated the venom of the ant Anochetus emarginatus with the aim of exploring these novel disulfide-rich peptides. The venom peptidome was initially investigated using a combination of reversed-phase HPLC and mass spectrometry, then the amino acid sequences of the major peptides were determined using a combination of Edman degradation and de novo MS/MS sequencing. We focused on one of these peptides, U1-PONTX-Ae1a (Ae1a), because of its novel sequence, which we predicted would form a novel 3D fold. Ae1a was chemically synthesized using Fmoc chemistry and its 3D structure was elucidated using NMR spectroscopy. The peptide was then tested for insecticidal activity and its effect on a range of human ion channels. Seven peptides named poneritoxins (PONTXs) were isolated and sequenced. The three-dimensional structure of synthetic Ae1a revealed a novel, compact scaffold in which a C-terminal β-hairpin is connected to the N-terminal region via two disulfide bonds. Synthetic Ae1a reversibly paralyzed blowflies and inhibited human L-type voltage-gated calcium channels (CaV1). Poneritoxins from Anochetus emarginatus venom are a novel class of toxins that are structurally unique among animal venoms. This study demonstrates that Anochetus ant venoms are a rich source of novel ion channel modulating peptides, some of which might be useful leads for the development of biopesticides.


  • Organizational Affiliation

    CNRS, UMR Ecologie des forêts de Guyane (AgroParisTech, CIRAD, CNRS, INRA, Université de Guyane, Université des Antilles), Campus Agronomique, BP 316, 97379 Kourou, France. Electronic address: t.axel@hotmail.fr.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
poneritoxin17Anochetus emarginatusMutation(s): 0 
UniProt
Find proteins for C0HJY4 (Anochetus emarginatus)
Explore C0HJY4 
Go to UniProtKB:  C0HJY4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupC0HJY4
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 30 
  • Conformers Submitted: 20 
  • Selection Criteria: Best stereochemical property judged by Molprobity 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2017-01-11
    Type: Initial release