Biological Assembly 1  

 3D View: Structure | 1D-3D View | Validation Report

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 20.80 kDa 
• Atom Count: 901 
• Modelled Residue Count: 114 
• Deposited Residue Count: 184 
• Unique protein chains: 2

2MBB

Solution Structure of the human Polymerase iota UBM1-Ubiquitin Complex

• PDB DOI: 10.2210/pdb2MBB/pdb
• BMRB: 19394

• Classification: TRANSFERASE, SIGNALING PROTEIN
• Organism(s): Streptococcus sp. 'group G, Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2013-07-29 Released: 2014-06-04 
• Deposition Author(s): Wang, S., Zhou, P.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

Sparsely-sampled, high-resolution 4-D omit spectra for detection and assignment of intermolecular NOEs of protein complexes.

Wang, S., Zhou, P.

(2014) J Biomol NMR 59: 51-56

• PubMed: 24789524 
• DOI: 10.1007/s10858-014-9834-2
• Primary Citation of Related Structures:  
  2MBB


• PubMed Abstract: 
  

Unambiguous detection and assignment of intermolecular NOEs are essential for structure determination of protein complexes by NMR. Such information has traditionally been obtained with 3-D half-filtered experiments, where scalar coupling-based purging of intramolecular signals allows for selective detection of intermolecular NOEs. However, due to the large variation of (1)JHC scalar couplings and limited chemical shift dispersion in the indirect proton dimension, it is difficult to obtain reliable and complete assignments of interfacial NOEs. Here, we demonstrate a strategy that combines selective labeling and high-resolution 4-D NOE spectroscopy with sparse sampling for reliable identification and assignment of intermolecular NOEs. Spectral subtraction of component-labeled complexes from a uniformly-labeled protein complex yields an "omit" spectrum containing positive intermolecular NOEs with little signal degeneracy. Such a strategy can be broadly applied to unbiased detection, assignment and presentation of intermolecular NOEs of protein complexes.

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Organizational Affiliation: 

Department of Biochemistry, Duke University Medical Center, Durham, NC, 27710, USA.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Immunoglobulin G-binding protein G/DNA polymerase iota fusion protein	A	106	Streptococcus sp. 'group G, Homo sapiens This entity is chimeric	Mutation(s): 0  Gene Names: spg, POLI EC: 2.7.7.7
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UNA4 (Homo sapiens) Explore Q9UNA4  Go to UniProtKB:  Q9UNA4
PHAROS:  Q9UNA4 GTEx:  ENSG00000101751
Find proteins for P06654 (Streptococcus sp. group G) Explore P06654  Go to UniProtKB:  P06654
UniProt Groups	P06654Q9UNA4

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Polyubiquitin-B	B	78	Homo sapiens	Mutation(s): 0  Gene Names: UBB
UniProt & NIH Common Fund Data Resources
Find proteins for P0CG47 (Homo sapiens) Explore P0CG47  Go to UniProtKB:  P0CG47
PHAROS:  P0CG47

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 
• OLDERADO: 2MBB Olderado

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2013-07-29 
• Released Date: 2014-06-04 
Deposition Author(s): Wang, S., Zhou, P.

Revision History  

• Version 1.0: 2014-06-04
  Type: Initial release