2MBB | pdb_00002mbb

Solution Structure of the human Polymerase iota UBM1-Ubiquitin Complex

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	3 mM [U-100% 15N] GB1-UBM1, 3 mM [U-100% 15N] ubiquitin, 100 mM potassium chloride, 25 mM sodium phosphate	90% H2O/10% D2O	100	7	ambient	298
2	2D 1H-13C HSQC	3 mM [U-100% 13C; U-100% 15N] GB1-UBM1, 3 mM [U-100% 13C; U-100% 15N] ubiquitin, 100 mM potassium chloride, 25 mM sodium phosphate	100% D2O	100	7	ambient	298
3	3D sparse-sampled HNCO	3 mM [U-100% 13C; U-100% 15N] GB1-UBM1, 3 mM [U-100% 13C; U-100% 15N] ubiquitin, 100 mM potassium chloride, 25 mM sodium phosphate	90% H2O/10% D2O	100	7	ambient	298
4	3D sparse-sampled HNCA	3 mM [U-100% 13C; U-100% 15N] GB1-UBM1, 3 mM [U-100% 13C; U-100% 15N] ubiquitin, 100 mM potassium chloride, 25 mM sodium phosphate	90% H2O/10% D2O	100	7	ambient	298
5	3D sparse-sampled HNCACB	3 mM [U-100% 13C; U-100% 15N] GB1-UBM1, 3 mM [U-100% 13C; U-100% 15N] ubiquitin, 100 mM potassium chloride, 25 mM sodium phosphate	90% H2O/10% D2O	100	7	ambient	298
6	3D sparse-sampled HN(CO)CA	3 mM [U-100% 13C; U-100% 15N] GB1-UBM1, 3 mM [U-100% 13C; U-100% 15N] ubiquitin, 100 mM potassium chloride, 25 mM sodium phosphate	90% H2O/10% D2O	100	7	ambient	298
7	3D 1H-15N NOESY	3 mM [U-100% 15N] GB1-UBM1, 3 mM [U-100% 15N] ubiquitin, 100 mM potassium chloride, 25 mM sodium phosphate	90% H2O/10% D2O	100	7	ambient	298
8	3D sparse-sampled HN(COCA)CB	3 mM [U-100% 13C; U-100% 15N] GB1-UBM1, 3 mM [U-100% 13C; U-100% 15N] ubiquitin, 100 mM potassium chloride, 25 mM sodium phosphate	90% H2O/10% D2O	100	7	ambient	298
9	3D (HACA)CO(CA)NH	3 mM [U-100% 13C; U-100% 15N] GB1-UBM1, 3 mM [U-100% 13C; U-100% 15N] ubiquitin, 100 mM potassium chloride, 25 mM sodium phosphate	90% H2O/10% D2O	100	7	ambient	298
10	3D sparse-sampled HA(CACO)NH	3 mM [U-100% 13C; U-100% 15N] GB1-UBM1, 3 mM [U-100% 13C; U-100% 15N] ubiquitin, 100 mM potassium chloride, 25 mM sodium phosphate	90% H2O/10% D2O	100	7	ambient	298
11	3D sparse-sampled HA(CA)NH	3 mM [U-100% 13C; U-100% 15N] GB1-UBM1, 3 mM [U-100% 13C; U-100% 15N] ubiquitin, 100 mM potassium chloride, 25 mM sodium phosphate	90% H2O/10% D2O	100	7	ambient	298
12	4D sparse-sampled HC(CO)NH-TOCSY	3 mM [U-100% 13C; U-100% 15N] GB1-UBM1, 3 mM [U-100% 13C; U-100% 15N] ubiquitin, 100 mM potassium chloride, 25 mM sodium phosphate	90% H2O/10% D2O	100	7	ambient	298
13	4D sparse-sampled CHNH NOESY	3 mM [U-100% 13C; U-100% 15N] GB1-UBM1, 3 mM [U-100% 13C; U-100% 15N] ubiquitin, 100 mM potassium chloride, 25 mM sodium phosphate	90% H2O/10% D2O	100	7	ambient	298
14	4D sparse-sampled CHCH NOESY	3 mM [U-100% 13C; U-100% 15N] GB1-UBM1, 3 mM [U-100% 13C; U-100% 15N] ubiquitin, 100 mM potassium chloride, 25 mM sodium phosphate	100% D2O	100	7	ambient	298
15	4D sparse-sampled CHCH NOESY	3 mM [U-100% 13C; U-100% 15N] GB1-UBM1, 3 mM ubiquitin, 100 mM potassium chloride, 25 mM sodium phosphate	100% D2O	100	7	ambient	298
16	4D sparse-sampled CHCH NOESY	3 mM GB1-UBM1, 3 mM [U-100% 13C; U-100% 15N] ubiquitin, 100 mM potassium chloride, 25 mM sodium phosphate	100% D2O	100	7	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	800
2	Varian	INOVA	600

NMR Refinement
Method	Details	Software
torsion angle dynamics		NMRPipe

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	200
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2	data analysis	Sparky		Goddard
3	data analysis	TALOS		Cornilescu, Delaglio and Bax
4	processing	SCRUB		Coggins and Zhou
5	structure solution	CYANA		Guntert, Mumenthaler and Wuthrich
6	refinement	CYANA