2M4J | pdb_00002m4j

40-residue beta-amyloid fibril derived from Alzheimer's disease brain


Experimental Data Snapshot

  • Method: SOLID-STATE NMR
  • Conformers Calculated: 600 
  • Conformers Submitted: 20 
  • Selection Criteria: no violations, low restraint energy, and maximum structural diversity 

wwPDB Validation 3D Report Full Report

Validation slider image for 2M4J

This is version 1.3 of the entry. See complete history

Literature

Molecular Structure of beta-Amyloid Fibrils in Alzheimer's Disease Brain Tissue.

Lu, J.X.Qiang, W.Yau, W.M.Schwieters, C.D.Meredith, S.C.Tycko, R.

(2013) Cell 154: 1257-1268

  • DOI: https://doi.org/10.1016/j.cell.2013.08.035
  • Primary Citation Related Structures: 
    2M4J

  • PubMed Abstract: 

    In vitro, β-amyloid (Aβ) peptides form polymorphic fibrils, with molecular structures that depend on growth conditions, plus various oligomeric and protofibrillar aggregates. Here, we investigate structures of human brain-derived Aβ fibrils, using seeded fibril growth from brain extract and data from solid-state nuclear magnetic resonance and electron microscopy. Experiments on tissue from two Alzheimer's disease (AD) patients with distinct clinical histories showed a single predominant 40 residue Aβ (Aβ40) fibril structure in each patient; however, the structures were different from one another. A molecular structural model developed for Aβ40 fibrils from one patient reveals features that distinguish in-vivo- from in-vitro-produced fibrils. The data suggest that fibrils in the brain may spread from a single nucleation site, that structural variations may correlate with variations in AD, and that structure-specific amyloid imaging agents may be an important future goal.


  • Organizational Affiliation
    • Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892-0520, USA.

Macromolecule Content 

  • Total Structure Weight: 39.02 kDa 
  • Atom Count: 2,754 
  • Modeled Residue Count: 360 
  • Deposited Residue Count: 360 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Amyloid beta A4 protein
A, B, C, D, E
A, B, C, D, E, F, G, H, I
40Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P05067 (Homo sapiens)
Explore P05067 
Go to UniProtKB:  P05067
PHAROS:  P05067
GTEx:  ENSG00000142192 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP05067
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLID-STATE NMR
  • Conformers Calculated: 600 
  • Conformers Submitted: 20 
  • Selection Criteria: no violations, low restraint energy, and maximum structural diversity 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-09-25
    Type: Initial release
  • Version 1.1: 2013-10-02
    Changes: Database references
  • Version 1.2: 2023-06-14
    Changes: Data collection, Database references, Other
  • Version 1.3: 2024-05-15
    Changes: Data collection, Database references