2M1X | pdb_00002m1x

TICAM-1 TIR domain structure


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

wwPDB Validation 3D Report Full Report

Validation slider image for 2M1X

This is version 1.2 of the entry. See complete history

Literature

Structures and interface mapping of the TIR domain-containing adaptor molecules involved in interferon signaling.

Enokizono, Y.Kumeta, H.Funami, K.Horiuchi, M.Sarmiento, J.Yamashita, K.Standley, D.M.Matsumoto, M.Seya, T.Inagaki, F.

(2013) Proc Natl Acad Sci U S A 110: 19908-19913

  • DOI: https://doi.org/10.1073/pnas.1222811110
  • Primary Citation Related Structures: 
    2M1W, 2M1X

  • PubMed Abstract: 

    Homotypic and heterotypic interactions between Toll/interleukin-1 receptor (TIR) domains in Toll-like receptors (TLRs) and downstream adaptors are essential to evoke innate immune responses. However, such oligomerization properties present intrinsic difficulties in structural studies of TIR domains. Here, using BB-loop mutations that disrupt homotypic interactions, we determined the structures of the monomeric TIR domain-containing adaptor molecule (TICAM)-1 and TICAM-2 TIR domains. Docking of the monomeric structures, together with yeast two hybrid-based mutagenesis assays, reveals that the homotypic interaction between TICAM-2 TIR is indispensable to present a scaffold for recruiting the monomeric moiety of the TICAM-1 TIR dimer. This result proposes a unique idea that oligomerization of upstream TIR domains is crucial for binding of downstream TIR domains. Furthermore, the bivalent nature of each TIR domain dimer can generate a large signaling complex under the activated TLRs, which would recruit downstream signaling molecules efficiently. This model is consistent with previous reports that BB-loop mutants completely abrogate downstream signaling.


  • Organizational Affiliation
    • Department of Structural Biology, Faculty of Advanced Life Science, Hokkaido University, N-21, W-11, Kita-ku, Sapporo 001-0021, Japan.

Macromolecule Content 

  • Total Structure Weight: 19.13 kDa 
  • Atom Count: 1,265 
  • Modeled Residue Count: 160 
  • Deposited Residue Count: 168 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
TIR domain-containing adapter molecule 1168Homo sapiensMutation(s): 1 
Gene Names: TICAM1PRVTIRBTRIF
UniProt & NIH Common Fund Data Resources
Find proteins for Q8IUC6 (Homo sapiens)
Explore Q8IUC6 
Go to UniProtKB:  Q8IUC6
PHAROS:  Q8IUC6
GTEx:  ENSG00000127666 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8IUC6
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-01-15
    Type: Initial release
  • Version 1.1: 2023-06-14
    Changes: Data collection, Database references, Other
  • Version 1.2: 2024-05-15
    Changes: Data collection, Database references