2M1W | pdb_00002m1w

TICAM-2 TIR domain


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

wwPDB Validation 3D Report Full Report

Validation slider image for 2M1W

This is version 1.2 of the entry. See complete history

Literature

Structures and interface mapping of the TIR domain-containing adaptor molecules involved in interferon signaling.

Enokizono, Y.Kumeta, H.Funami, K.Horiuchi, M.Sarmiento, J.Yamashita, K.Standley, D.M.Matsumoto, M.Seya, T.Inagaki, F.

(2013) Proc Natl Acad Sci U S A 110: 19908-19913

  • DOI: https://doi.org/10.1073/pnas.1222811110
  • Primary Citation Related Structures: 
    2M1W, 2M1X

  • PubMed Abstract: 

    Homotypic and heterotypic interactions between Toll/interleukin-1 receptor (TIR) domains in Toll-like receptors (TLRs) and downstream adaptors are essential to evoke innate immune responses. However, such oligomerization properties present intrinsic difficulties in structural studies of TIR domains. Here, using BB-loop mutations that disrupt homotypic interactions, we determined the structures of the monomeric TIR domain-containing adaptor molecule (TICAM)-1 and TICAM-2 TIR domains. Docking of the monomeric structures, together with yeast two hybrid-based mutagenesis assays, reveals that the homotypic interaction between TICAM-2 TIR is indispensable to present a scaffold for recruiting the monomeric moiety of the TICAM-1 TIR dimer. This result proposes a unique idea that oligomerization of upstream TIR domains is crucial for binding of downstream TIR domains. Furthermore, the bivalent nature of each TIR domain dimer can generate a large signaling complex under the activated TLRs, which would recruit downstream signaling molecules efficiently. This model is consistent with previous reports that BB-loop mutants completely abrogate downstream signaling.


  • Organizational Affiliation
    • Department of Structural Biology, Faculty of Advanced Life Science, Hokkaido University, N-21, W-11, Kita-ku, Sapporo 001-0021, Japan.

Macromolecule Content 

  • Total Structure Weight: 19.39 kDa 
  • Atom Count: 1,366 
  • Modeled Residue Count: 166 
  • Deposited Residue Count: 166 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
TIR domain-containing adapter molecule 2166Homo sapiensMutation(s): 1 
Gene Names: TICAM2TIRAP3TIRPTRAM
UniProt & NIH Common Fund Data Resources
Find proteins for Q86XR7 (Homo sapiens)
Explore Q86XR7 
Go to UniProtKB:  Q86XR7
PHAROS:  Q86XR7
GTEx:  ENSG00000243414 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ86XR7
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-01-15
    Type: Initial release
  • Version 1.1: 2023-06-14
    Changes: Data collection, Database references, Other
  • Version 1.2: 2024-05-15
    Changes: Data collection, Database references