2LE4

Solution structure of the HMG box DNA-binding domain of human stem cell transcription factor Sox2

PDB DOI: https://doi.org/10.2210/pdb2LE4/pdb
BMRB: 17691

Classification: TRANSCRIPTION
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-06-06 Released: 2011-07-27
Deposition Author(s): Sahu, S.C., Markley, J.L., Tonelli, M., Bahrami, A., Eghbalnia, H.R., Center for Eukaryotic Structural Genomics (CESG)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Solution structure of the HMG box DNA-binding domain of human stem cell transcription factor Sox2

Sahu, S., Markley, J., Tonelli, M., Bahrami, A., Eghbalnia, H.

To be published.

Macromolecule Content

Total Structure Weight: 9.92 kDa
Atom Count: 694
Modelled Residue Count: 81
Deposited Residue Count: 81
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcription factor SOX-2	A	81	Homo sapiens	Mutation(s): 0 Gene Names: SOX2
UniProt & NIH Common Fund Data Resources
Find proteins for P48431 (Homo sapiens) Explore P48431 Go to UniProtKB: P48431
PHAROS: P48431 GTEx: ENSG00000181449
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P48431
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2011-07-27

Deposition Author(s):

Eghbalnia, H.R.

Center for Eukaryotic Structural Genomics (CESG)

Revision History (Full details and data files)

Version 1.0: 2011-07-27
Type: Initial release
Version 1.1: 2023-06-14
Changes: Database references, Other
Version 1.2: 2024-05-15
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.