2LE4 | pdb_00002le4

Solution structure of the HMG box DNA-binding domain of human stem cell transcription factor Sox2

PDB DOI: https://doi.org/10.2210/pdb2LE4/pdb
BMRB: 17691

Classification: TRANSCRIPTION
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-06-06 Released: 2011-07-27
Deposition Author(s): Sahu, S.C., Markley, J.L., Tonelli, M., Bahrami, A., Eghbalnia, H.R., Center for Eukaryotic Structural Genomics (CESG)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function

wwPDB Validation 3D Report Full Report

Validation slider image for 2LE4

This is version 1.2 of the entry. See complete history.

Literature

Solution structure of the HMG box DNA-binding domain of human stem cell transcription factor Sox2

Sahu, S., Markley, J., Tonelli, M., Bahrami, A., Eghbalnia, H.

To be published.

Macromolecule Content

Total Structure Weight: 9.92 kDa
Atom Count: 694
Modeled Residue Count: 81
Deposited Residue Count: 81
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcription factor SOX-2	A	81	Homo sapiens	Mutation(s): 0 Gene Names: SOX2
UniProt & NIH Common Fund Data Resources
Find proteins for P48431 (Homo sapiens) Explore P48431 Go to UniProtKB: P48431
PHAROS: P48431 GTEx: ENSG00000181449
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P48431
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2011-07-27

Deposition Author(s):

Eghbalnia, H.R.

Center for Eukaryotic Structural Genomics (CESG)

Revision History (Full details and data files)

Version 1.0: 2011-07-27
Type: Initial release
Version 1.1: 2023-06-14
Changes: Database references, Other
Version 1.2: 2024-05-15
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.