2LE3

N-terminal regulatory segment of carnitine palmitoyltransferase 1A

Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 20 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history. 


Literature

An Environment-dependent Structural Switch Underlies the Regulation of Carnitine Palmitoyltransferase 1A.

Rao, J.N., Warren, G.Z., Estolt-Povedano, S., Zammit, V.A., Ulmer, T.S.

(2011) J Biol Chem 286: 42545-42554

  • DOI: 10.1074/jbc.M111.306951
  • Primary Citation of Related Structures:  
    2LE3

  • PubMed Abstract: 

    • The enzyme carnitine palmitoyltransferase 1 (CPT1), which is anchored in the outer mitochondrial membrane (OMM), controls the rate-limiting step in fatty acid β-oxidation in mammalian tissues. It is inhibited by malonyl-CoA, the first intermediate of fatty acid synthesis, and it responds to OMM curvature and lipid characteristics, which reflect long term nutrient/hormone availability ...

    The enzyme carnitine palmitoyltransferase 1 (CPT1), which is anchored in the outer mitochondrial membrane (OMM), controls the rate-limiting step in fatty acid β-oxidation in mammalian tissues. It is inhibited by malonyl-CoA, the first intermediate of fatty acid synthesis, and it responds to OMM curvature and lipid characteristics, which reflect long term nutrient/hormone availability. Here, we show that the N-terminal regulatory domain (N) of CPT1A can adopt two complex amphiphilic structural states, termed Nα and Nβ, that interchange in a switch-like manner in response to offered binding surface curvature. Structure-based site-directed mutageneses of native CPT1A suggest Nα to be inhibitory and Nβ to be noninhibitory, with the relative Nα/Nβ ratio setting the prevalent malonyl-CoA sensitivity of the enzyme. Based on the amphiphilic nature of N and molecular modeling, we propose malonyl-CoA sensitivity to be coupled to the properties of the OMM by Nα-OMM associations that alter the Nα/Nβ ratio. For enzymes residing at the membrane-water interface, this constitutes an integrative regulatory mechanism of exceptional sophistication.

    Organizational Affiliation: 

    Department of Biochemistry and Molecular Biology and Zilkha Neurogenetic Institute, Keck School of Medicine, University of Southern California, Los Angeles, California 90033, USA.



Macromolecules
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(by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Carnitine O-palmitoyltransferase 1, liver isoformA42Homo sapiensMutation(s): 0 
Gene Names: CPT1A, CPT1
EC: 2.3.1.21
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P50416 (Homo sapiens)
Explore P50416 
Go to UniProtKB:  P50416
PHAROS:  P50416
GTEx:  ENSG00000110090
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 20 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 
  • OLDERADO: 2LE3 Olderado

Structure Validation

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Entry History 

Deposition Data

  • Deposited Date: 2011-06-06 
  • Released Date: 2011-10-19 
    • Deposition Author(s): Ulmer, T.S., Rao, J.N.

Revision History  (Full details and data files)

  • Version 1.0: 2011-10-19
    Type: Initial release
  • Version 1.1: 2011-12-28
    Changes: Database references