2L5D | pdb_00002l5d

Solution Structures of human PIWI-like 1 PAZ domain with ssRNA (5'-pUGACA)

PDB DOI: https://doi.org/10.2210/pdb2L5D/pdb
NAKB: 2L5D
BMRB: 17273

Classification: RNA binding protein/RNA
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2010-10-29 Released: 2011-04-20
Deposition Author(s): Zeng, L., Zhang, Q., Yan, K., Zhou, M.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 2L5D

This is version 1.2 of the entry. See complete history.

Literature

Structural insights into piRNA recognition by the human PIWI-like 1 PAZ domain.

Zeng, L., Zhang, Q., Yan, K., Zhou, M.M.

(2011) Proteins 79: 2004-2009

PubMed: 21465557 Search on PubMed Search on PubMed Central
DOI: https://doi.org/10.1002/prot.23003
Primary Citation Related Structures:
2L5C, 2L5D

Organizational Affiliation

Department of Structural and Chemical Biology, Mount Sinai School of Medicine, 1425 Madison Avenue, Box 1677, New York 10029, USA. lei.zeng@mssm.edu

Macromolecule Content

Total Structure Weight: 17.24 kDa
Atom Count: 1,206
Modeled Residue Count: 139
Deposited Residue Count: 139
Unique protein chains: 1
Unique nucleic acid chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Piwi-like protein 1	A	134	Homo sapiens	Mutation(s): 0 Gene Names: PIWIL1, HIWI EC: 3.1.26
UniProt & NIH Common Fund Data Resources
Find proteins for Q96J94 (Homo sapiens) Explore Q96J94 Go to UniProtKB: Q96J94
PHAROS: Q96J94 GTEx: ENSG00000125207
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q96J94
Sequence Annotations Expand
Reference Sequence

Find similar nucleic acids by: Sequence

Molecule	Chains	Length	Organism	Image
Entity ID: 2
5'-R(UPGPAPCP*A)-3'	B	5	Homo sapiens
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

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Entry History

Deposition Data

Released Date: 2011-04-20

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-04-20
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2024-05-01
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.