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Solution Structures of human PIWI-like 1 PAZ domain with ssRNA (5'-pUGACA)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D HNCACB 100 mM sodium phosphate-4, 150 mM sodium chloride-5, 5 mM [U-100% 2H] DTT-6 90% H2O/10% D2O 6.5 ambient 298 2 3D HN(COCA)CB 100 mM sodium phosphate-4, 150 mM sodium chloride-5, 5 mM [U-100% 2H] DTT-6 90% H2O/10% D2O 6.5 ambient 298 3 3D 1H-15N NOESY 100 mM sodium phosphate-4, 150 mM sodium chloride-5, 5 mM [U-100% 2H] DTT-6 90% H2O/10% D2O 6.5 ambient 298 4 3D 1H-13C NOESY 100 mM sodium phosphate-1, 150 mM sodium chloride-2, 5 mM [U-100% 2H] DTT-3 100% D2O 6.5 ambient 298 5 3D 13C-Edited-13C/15N-filtered NOESY 100 mM sodium phosphate-1, 150 mM sodium chloride-2, 5 mM [U-100% 2H] DTT-3 100% D2O 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Bruker AVANCE 600 3 Bruker DRX 500 4 Bruker AVANCE 500
NMR Refinement Method Details Software DGSA-distance geometry simulated annealing, torsion angle dynamics ARIA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement ARIA 2.2 Linge, O'Donoghue and Nilges 2 processing NMRPipe 2.3 Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 chemical shift calculation NMRPipe 2.3 Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 peak picking NMRView 5.04 Johnson, One Moon Scientific 5 chemical shift assignment NMRView 5.04 Johnson, One Moon Scientific 6 data analysis NMRView 5.04 Johnson, One Moon Scientific 7 structure solution CNS 1.2 Brunger, Adams, Clore, Gros, Nilges and Read